Model info
Transcription factorOtx2
ModelOTX2_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusdvddRGGATTAd
Best auROC (human)0.8474218235387033
Best auROC (mouse)0.9038058397609804
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)18
Aligned words500
TF familyPaired-related HD factors{3.1.3}
TF subfamilyOTX{3.1.3.17}
MGI97451
EntrezGene
UniProt IDOTX2_MOUSE
UniProt ACP80206
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.362775
0.0005 6.268575
0.0001 8.0714
GTEx tissue expression atlas Otx2 expression
Motifs in JASPAR
PCM
ACGT
01124.074.084.0218.0
02231.072.0130.067.0
03264.050.0130.056.0
04162.065.0204.069.0
05253.030.0183.034.0
0672.01.0419.08.0
079.05.0486.00.0
08430.067.00.03.0
094.00.03.0493.0
1015.07.04.0474.0
11429.01.011.059.0
12226.035.0130.0109.0
PWM
ACGT
01-0.008-0.516-0.3920.551
020.608-0.5430.039-0.613
030.741-0.8980.039-0.788
040.256-0.6430.485-0.584
050.699-1.3890.377-1.27
06-0.543-3.9031.201-2.584
07-2.484-2.9611.349-4.4
081.227-0.613-4.4-3.325
09-3.126-4.4-3.3251.363
10-2.034-2.694-3.1261.324
111.224-3.903-2.311-0.737
120.587-1.2420.039-0.135