Model info
Transcription factorOvol1
ModelOVOL1_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length9
Quality
C
Motif rank
0
ConsensusKGTAACKGT
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words7
TF familyMore than 3 adjacent zinc finger factors{2.3.3}
TF subfamilyOVOL-factors{2.3.3.17}
MGI1330290
EntrezGene18426
UniProt IDOVOL1_MOUSE
UniProt ACQ9WTJ2
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.89978
0.0005 5.44968
0.0001 6.5820799999999995
GTEx tissue expression atlas Ovol1 expression
Motifs in JASPAR
PCM
ACGT
010.01.02.04.0
021.00.06.00.0
030.00.01.06.0
047.00.00.00.0
056.01.00.00.0
061.06.00.00.0
071.00.02.04.0
081.00.06.00.0
092.00.00.05.0
PWM
ACGT
01-1.525-0.4080.1060.696
02-0.408-1.5251.065-1.525
03-1.525-1.525-0.4081.065
041.208-1.525-1.525-1.525
051.065-0.408-1.525-1.525
06-0.4081.065-1.525-1.525
07-0.408-1.5250.1060.696
08-0.408-1.5251.065-1.525
090.106-1.525-1.5250.897