Model info
Transcription factorPax2
ModelPAX2_MOUSE.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length18
Quality
D
Motif rank
0
ConsensusvhbnvdTSAhRvdYGAYW
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words50
TF familyPaired domain only{3.2.2}
TF subfamilyPAX-2-like factors (partial homeobox){3.2.2.2}
MGI97486
EntrezGene18504
UniProt IDPAX2_MOUSE
UniProt ACP32114
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.91811
0.0005 5.6098099999999995
0.0001 7.043560000000001
GTEx tissue expression atlas Pax2 expression
Motifs in JASPAR
PCM
ACGT
0111.6149.18220.6998.734
0216.67913.7992.87916.872
032.8797.86512.65826.826
048.9123.2279.1828.91
0527.528.04110.0514.617
069.7798.73422.8068.91
070.07.7690.96641.494
084.0229.33714.8612.01
0941.3192.016.90.0
107.59312.934.71424.991
1110.922.97629.4336.9
1213.20226.1066.0314.889
139.8754.61725.68510.051
142.87912.0610.035.288
154.024.88941.3190.0
1639.2120.02.019.006
173.47630.6710.016.082
1825.8632.0917.25315.022
PWM
ACGT
01-0.072-0.2870.471-0.332
020.2660.088-1.2550.277
03-1.255-0.4260.0070.72
04-0.3140.581-0.287-0.314
050.744-0.406-0.205-0.883
06-0.23-0.3320.564-0.314
07-2.626-0.437-1.941.144
08-0.9960.8060.157-1.51
091.139-1.51-0.541-2.626
10-0.4570.027-0.8660.652
11-0.129-1.230.809-0.541
120.0470.694-0.658-0.836
13-0.221-0.8830.678-0.205
14-1.255-0.037-2.6260.986
15-0.996-0.8361.139-2.626
161.088-2.626-1.51-0.304
17-1.1110.849-2.6260.231
180.685-1.484-0.4970.167