Model info
Transcription factorPAX5
ModelPAX5_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length21
Quality
A
Motif rank
0
ConsensusvbvdGdKCARSvRRSCRdGAC
Best auROC (human)0.9221357420084679
Best auROC (mouse)0.8228401207348712
Peak sets in benchmark (human)32
Peak sets in benchmark (mouse)8
Aligned words202
TF familyPaired domain only{3.2.2}
TF subfamilyPAX-2-like factors (partial homeobox){3.2.2.2}
HGNC8619
EntrezGene5079
UniProt IDPAX5_HUMAN
UniProt ACQ02548
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 2.81121
0.0005 3.7737600000000002
0.0001 5.811859999999999
GTEx tissue expression atlas PAX5 expression
ReMap ChIP-seq dataset list PAX5 datasets
Motifs in JASPAR
PCM
ACGT
0127.057.0102.016.0
0226.0101.038.037.0
0330.084.067.021.0
0441.011.052.098.0
0540.09.0152.01.0
0632.028.0109.033.0
075.024.0126.047.0
087.0177.012.06.0
09158.07.033.04.0
1078.023.094.07.0
117.0148.026.021.0
1283.054.056.09.0
1363.04.0125.010.0
14138.08.033.023.0
157.033.0156.06.0
162.0158.09.033.0
1744.07.0145.06.0
1865.06.032.099.0
1935.06.0160.01.0
20164.07.021.010.0
2124.0162.06.010.0
PWM
ACGT
01-0.6040.1180.69-1.096
02-0.640.68-0.276-0.302
03-0.5030.4990.276-0.842
04-0.202-1.4360.0290.651
05-0.226-1.6131.085-3.103
06-0.442-0.5690.756-0.412
07-2.103-0.7160.899-0.07
08-1.8281.236-1.358-1.956
091.123-1.828-0.412-2.275
100.426-0.7560.609-1.828
11-1.8281.058-0.64-0.842
120.4870.0650.101-1.613
130.216-2.2750.891-1.521
140.989-1.715-0.412-0.756
15-1.828-0.4121.11-1.956
16-2.7461.123-1.613-0.412
17-0.134-1.8281.038-1.956
180.247-1.956-0.4420.661
19-0.355-1.9561.136-3.103
201.16-1.828-0.842-1.521
21-0.7161.148-1.956-1.521