Model info
| Transcription factor | PAX5 (GeneCards) | ||||||||
| Model | PAX5_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 21 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vbvdGdKCARSvRRSCRdGAC | ||||||||
| Best auROC (human) | 0.922 | ||||||||
| Best auROC (mouse) | 0.823 | ||||||||
| Peak sets in benchmark (human) | 32 | ||||||||
| Peak sets in benchmark (mouse) | 8 | ||||||||
| Aligned words | 202 | ||||||||
| TF family | Paired domain only {3.2.2} | ||||||||
| TF subfamily | PAX-2-like factors (partial homeobox) {3.2.2.2} | ||||||||
| HGNC | HGNC:8619 | ||||||||
| EntrezGene | GeneID:5079 (SSTAR profile) | ||||||||
| UniProt ID | PAX5_HUMAN | ||||||||
| UniProt AC | Q02548 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | PAX5 expression | ||||||||
| ReMap ChIP-seq dataset list | PAX5 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 27.0 | 57.0 | 102.0 | 16.0 |
| 02 | 26.0 | 101.0 | 38.0 | 37.0 |
| 03 | 30.0 | 84.0 | 67.0 | 21.0 |
| 04 | 41.0 | 11.0 | 52.0 | 98.0 |
| 05 | 40.0 | 9.0 | 152.0 | 1.0 |
| 06 | 32.0 | 28.0 | 109.0 | 33.0 |
| 07 | 5.0 | 24.0 | 126.0 | 47.0 |
| 08 | 7.0 | 177.0 | 12.0 | 6.0 |
| 09 | 158.0 | 7.0 | 33.0 | 4.0 |
| 10 | 78.0 | 23.0 | 94.0 | 7.0 |
| 11 | 7.0 | 148.0 | 26.0 | 21.0 |
| 12 | 83.0 | 54.0 | 56.0 | 9.0 |
| 13 | 63.0 | 4.0 | 125.0 | 10.0 |
| 14 | 138.0 | 8.0 | 33.0 | 23.0 |
| 15 | 7.0 | 33.0 | 156.0 | 6.0 |
| 16 | 2.0 | 158.0 | 9.0 | 33.0 |
| 17 | 44.0 | 7.0 | 145.0 | 6.0 |
| 18 | 65.0 | 6.0 | 32.0 | 99.0 |
| 19 | 35.0 | 6.0 | 160.0 | 1.0 |
| 20 | 164.0 | 7.0 | 21.0 | 10.0 |
| 21 | 24.0 | 162.0 | 6.0 | 10.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.604 | 0.118 | 0.69 | -1.096 |
| 02 | -0.64 | 0.68 | -0.276 | -0.302 |
| 03 | -0.503 | 0.499 | 0.276 | -0.842 |
| 04 | -0.202 | -1.436 | 0.029 | 0.651 |
| 05 | -0.226 | -1.613 | 1.085 | -3.103 |
| 06 | -0.442 | -0.569 | 0.756 | -0.412 |
| 07 | -2.103 | -0.716 | 0.899 | -0.07 |
| 08 | -1.828 | 1.236 | -1.358 | -1.956 |
| 09 | 1.123 | -1.828 | -0.412 | -2.275 |
| 10 | 0.426 | -0.756 | 0.609 | -1.828 |
| 11 | -1.828 | 1.058 | -0.64 | -0.842 |
| 12 | 0.487 | 0.065 | 0.101 | -1.613 |
| 13 | 0.216 | -2.275 | 0.891 | -1.521 |
| 14 | 0.989 | -1.715 | -0.412 | -0.756 |
| 15 | -1.828 | -0.412 | 1.11 | -1.956 |
| 16 | -2.746 | 1.123 | -1.613 | -0.412 |
| 17 | -0.134 | -1.828 | 1.038 | -1.956 |
| 18 | 0.247 | -1.956 | -0.442 | 0.661 |
| 19 | -0.355 | -1.956 | 1.136 | -3.103 |
| 20 | 1.16 | -1.828 | -0.842 | -1.521 |
| 21 | -0.716 | 1.148 | -1.956 | -1.521 |