Model info
Transcription factorPAX6
ModelPAX6_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
C
Motif rank
0
ConsensusWYMYRCWTSRnT
Best auROC (human)0.7494079589912269
Best auROC (mouse)0.7341201666331708
Peak sets in benchmark (human)6
Peak sets in benchmark (mouse)8
Aligned words500
TF familyPaired plus homeo domain{3.2.1}
TF subfamilyPAX-4/6{3.2.1.2}
HGNC8620
EntrezGene5080
UniProt IDPAX6_HUMAN
UniProt ACP26367
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.13416
0.0005 5.89856
0.0001 7.433935
GTEx tissue expression atlas PAX6 expression
ReMap ChIP-seq dataset list PAX6 datasets
Motifs in JASPAR
PCM
ACGT
0162.016.037.0385.0
0211.0171.019.0299.0
03208.0234.025.033.0
0422.0283.020.0175.0
05143.035.0303.019.0
065.0402.083.010.0
07129.068.09.0294.0
0814.038.09.0439.0
097.0204.0284.05.0
10355.08.0118.019.0
1173.0179.0144.0104.0
1233.047.016.0404.0
PWM
ACGT
01-0.689-1.975-1.1891.117
02-2.3110.31-1.8180.865
030.5040.621-1.561-1.298
04-1.6810.81-1.770.333
050.133-1.2420.878-1.818
06-2.9611.16-0.403-2.394
070.031-0.599-2.4840.848
08-2.096-1.163-2.4841.247
09-2.6940.4850.814-2.961
101.036-2.584-0.057-1.818
11-0.5290.3550.14-0.181
12-1.298-0.958-1.9751.165