Model info
Transcription factorPax6
ModelPAX6_MOUSE.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
B
Motif rank
0
ConsensushKYvYRChTSRnYRv
Best auROC (human)0.6063362237112333
Best auROC (mouse)0.8003053316109859
Peak sets in benchmark (human)6
Peak sets in benchmark (mouse)8
Aligned words500
TF familyPaired plus homeo domain{3.2.1}
TF subfamilyPAX-4/6{3.2.1.2}
MGI97490
EntrezGene18508
UniProt IDPAX6_MOUSE
UniProt ACP63015
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.319510000000001
0.0005 11.01511
0.0001 14.50436
GTEx tissue expression atlas Pax6 expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
014.01.011.046.015.09.04.092.04.015.05.032.013.08.027.0214.0
022.020.00.014.03.017.00.013.04.025.02.016.09.0115.06.0254.0
0313.02.02.01.0131.023.08.015.01.06.00.01.049.0202.028.018.0
040.0109.05.080.018.0151.00.064.02.016.01.019.00.022.01.012.0
050.02.018.00.0131.05.0157.05.01.01.05.00.011.02.0162.00.0
062.096.041.04.00.09.00.01.02.0269.069.02.00.04.00.01.0
074.00.00.00.0122.056.013.0187.020.022.02.066.00.03.01.04.0
082.08.00.0136.04.08.03.066.00.02.01.013.04.044.07.0202.0
090.04.05.01.00.047.08.07.00.07.04.00.06.0154.0244.013.0
104.00.02.00.0167.014.017.014.0182.07.067.05.014.03.04.00.0
1181.0113.0109.064.02.017.03.02.09.044.020.017.01.011.05.02.0
128.019.02.064.013.013.03.0156.07.022.05.0103.01.07.05.072.0
139.01.015.04.016.00.038.07.05.00.09.01.048.05.0301.041.0
1422.022.028.06.00.02.01.03.0149.0128.077.09.016.018.015.04.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.975-3.126-1.0220.383-0.721-1.215-1.9751.072-1.975-0.721-1.770.023-0.86-1.328-0.1441.913
02-2.584-0.439-4.4-0.788-2.234-0.599-4.4-0.86-1.975-0.22-2.584-0.658-1.2151.294-1.62.084
03-0.86-2.584-2.584-3.1261.424-0.302-1.328-0.721-3.126-1.6-4.4-3.1260.4451.856-0.108-0.543
04-4.41.241-1.770.932-0.5431.565-4.40.711-2.584-0.658-3.126-0.49-4.4-0.346-3.126-0.938
05-4.4-2.584-0.543-4.41.424-1.771.604-1.77-3.126-3.126-1.77-4.4-1.022-2.5841.636-4.4
06-2.5841.1140.269-1.975-4.4-1.215-4.4-3.126-2.5842.1420.785-2.584-4.4-1.975-4.4-3.126
07-1.975-4.4-4.4-4.41.3530.578-0.861.779-0.439-0.346-2.5840.741-4.4-2.234-3.126-1.975
08-2.584-1.328-4.41.461-1.975-1.328-2.2340.741-4.4-2.584-3.126-0.86-1.9750.339-1.4541.856
09-4.4-1.975-1.77-3.126-4.40.404-1.328-1.454-4.4-1.454-1.975-4.4-1.61.5852.044-0.86
10-1.975-4.4-2.584-4.41.666-0.788-0.599-0.7881.752-1.4540.756-1.77-0.788-2.234-1.975-4.4
110.9451.2761.2410.711-2.584-0.599-2.234-2.584-1.2150.339-0.439-0.599-3.126-1.022-1.77-2.584
12-1.328-0.49-2.5840.711-0.86-0.86-2.2341.598-1.454-0.346-1.771.184-3.126-1.454-1.770.828
13-1.215-3.126-0.721-1.975-0.658-4.40.193-1.454-1.77-4.4-1.215-3.1260.425-1.772.2540.269
14-0.346-0.346-0.108-1.6-4.4-2.584-3.126-2.2341.5521.4010.894-1.215-0.658-0.543-0.721-1.975