Transcription factor | Pax6 | ||||||||
Model | PAX6_MOUSE.H11DI.0.B | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 15 | ||||||||
Quality | B | ||||||||
Motif rank | 0 | ||||||||
Consensus | hKYvYRChTSRnYRv | ||||||||
Best auROC (human) | 0.606 | ||||||||
Best auROC (mouse) | 0.8 | ||||||||
Peak sets in benchmark (human) | 6 | ||||||||
Peak sets in benchmark (mouse) | 8 | ||||||||
Aligned words | 500 | ||||||||
TF family | Paired plus homeo domain {3.2.1} | ||||||||
TF subfamily | PAX-4/6 {3.2.1.2} | ||||||||
MGI | MGI:97490 | ||||||||
EntrezGene | GeneID:18508 (SSTAR profile) | ||||||||
UniProt ID | PAX6_MOUSE | ||||||||
UniProt AC | P63015 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Pax6 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 4.0 | 1.0 | 11.0 | 46.0 | 15.0 | 9.0 | 4.0 | 92.0 | 4.0 | 15.0 | 5.0 | 32.0 | 13.0 | 8.0 | 27.0 | 214.0 |
02 | 2.0 | 20.0 | 0.0 | 14.0 | 3.0 | 17.0 | 0.0 | 13.0 | 4.0 | 25.0 | 2.0 | 16.0 | 9.0 | 115.0 | 6.0 | 254.0 |
03 | 13.0 | 2.0 | 2.0 | 1.0 | 131.0 | 23.0 | 8.0 | 15.0 | 1.0 | 6.0 | 0.0 | 1.0 | 49.0 | 202.0 | 28.0 | 18.0 |
04 | 0.0 | 109.0 | 5.0 | 80.0 | 18.0 | 151.0 | 0.0 | 64.0 | 2.0 | 16.0 | 1.0 | 19.0 | 0.0 | 22.0 | 1.0 | 12.0 |
05 | 0.0 | 2.0 | 18.0 | 0.0 | 131.0 | 5.0 | 157.0 | 5.0 | 1.0 | 1.0 | 5.0 | 0.0 | 11.0 | 2.0 | 162.0 | 0.0 |
06 | 2.0 | 96.0 | 41.0 | 4.0 | 0.0 | 9.0 | 0.0 | 1.0 | 2.0 | 269.0 | 69.0 | 2.0 | 0.0 | 4.0 | 0.0 | 1.0 |
07 | 4.0 | 0.0 | 0.0 | 0.0 | 122.0 | 56.0 | 13.0 | 187.0 | 20.0 | 22.0 | 2.0 | 66.0 | 0.0 | 3.0 | 1.0 | 4.0 |
08 | 2.0 | 8.0 | 0.0 | 136.0 | 4.0 | 8.0 | 3.0 | 66.0 | 0.0 | 2.0 | 1.0 | 13.0 | 4.0 | 44.0 | 7.0 | 202.0 |
09 | 0.0 | 4.0 | 5.0 | 1.0 | 0.0 | 47.0 | 8.0 | 7.0 | 0.0 | 7.0 | 4.0 | 0.0 | 6.0 | 154.0 | 244.0 | 13.0 |
10 | 4.0 | 0.0 | 2.0 | 0.0 | 167.0 | 14.0 | 17.0 | 14.0 | 182.0 | 7.0 | 67.0 | 5.0 | 14.0 | 3.0 | 4.0 | 0.0 |
11 | 81.0 | 113.0 | 109.0 | 64.0 | 2.0 | 17.0 | 3.0 | 2.0 | 9.0 | 44.0 | 20.0 | 17.0 | 1.0 | 11.0 | 5.0 | 2.0 |
12 | 8.0 | 19.0 | 2.0 | 64.0 | 13.0 | 13.0 | 3.0 | 156.0 | 7.0 | 22.0 | 5.0 | 103.0 | 1.0 | 7.0 | 5.0 | 72.0 |
13 | 9.0 | 1.0 | 15.0 | 4.0 | 16.0 | 0.0 | 38.0 | 7.0 | 5.0 | 0.0 | 9.0 | 1.0 | 48.0 | 5.0 | 301.0 | 41.0 |
14 | 22.0 | 22.0 | 28.0 | 6.0 | 0.0 | 2.0 | 1.0 | 3.0 | 149.0 | 128.0 | 77.0 | 9.0 | 16.0 | 18.0 | 15.0 | 4.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | -1.975 | -3.126 | -1.022 | 0.383 | -0.721 | -1.215 | -1.975 | 1.072 | -1.975 | -0.721 | -1.77 | 0.023 | -0.86 | -1.328 | -0.144 | 1.913 |
02 | -2.584 | -0.439 | -4.4 | -0.788 | -2.234 | -0.599 | -4.4 | -0.86 | -1.975 | -0.22 | -2.584 | -0.658 | -1.215 | 1.294 | -1.6 | 2.084 |
03 | -0.86 | -2.584 | -2.584 | -3.126 | 1.424 | -0.302 | -1.328 | -0.721 | -3.126 | -1.6 | -4.4 | -3.126 | 0.445 | 1.856 | -0.108 | -0.543 |
04 | -4.4 | 1.241 | -1.77 | 0.932 | -0.543 | 1.565 | -4.4 | 0.711 | -2.584 | -0.658 | -3.126 | -0.49 | -4.4 | -0.346 | -3.126 | -0.938 |
05 | -4.4 | -2.584 | -0.543 | -4.4 | 1.424 | -1.77 | 1.604 | -1.77 | -3.126 | -3.126 | -1.77 | -4.4 | -1.022 | -2.584 | 1.636 | -4.4 |
06 | -2.584 | 1.114 | 0.269 | -1.975 | -4.4 | -1.215 | -4.4 | -3.126 | -2.584 | 2.142 | 0.785 | -2.584 | -4.4 | -1.975 | -4.4 | -3.126 |
07 | -1.975 | -4.4 | -4.4 | -4.4 | 1.353 | 0.578 | -0.86 | 1.779 | -0.439 | -0.346 | -2.584 | 0.741 | -4.4 | -2.234 | -3.126 | -1.975 |
08 | -2.584 | -1.328 | -4.4 | 1.461 | -1.975 | -1.328 | -2.234 | 0.741 | -4.4 | -2.584 | -3.126 | -0.86 | -1.975 | 0.339 | -1.454 | 1.856 |
09 | -4.4 | -1.975 | -1.77 | -3.126 | -4.4 | 0.404 | -1.328 | -1.454 | -4.4 | -1.454 | -1.975 | -4.4 | -1.6 | 1.585 | 2.044 | -0.86 |
10 | -1.975 | -4.4 | -2.584 | -4.4 | 1.666 | -0.788 | -0.599 | -0.788 | 1.752 | -1.454 | 0.756 | -1.77 | -0.788 | -2.234 | -1.975 | -4.4 |
11 | 0.945 | 1.276 | 1.241 | 0.711 | -2.584 | -0.599 | -2.234 | -2.584 | -1.215 | 0.339 | -0.439 | -0.599 | -3.126 | -1.022 | -1.77 | -2.584 |
12 | -1.328 | -0.49 | -2.584 | 0.711 | -0.86 | -0.86 | -2.234 | 1.598 | -1.454 | -0.346 | -1.77 | 1.184 | -3.126 | -1.454 | -1.77 | 0.828 |
13 | -1.215 | -3.126 | -0.721 | -1.975 | -0.658 | -4.4 | 0.193 | -1.454 | -1.77 | -4.4 | -1.215 | -3.126 | 0.425 | -1.77 | 2.254 | 0.269 |
14 | -0.346 | -0.346 | -0.108 | -1.6 | -4.4 | -2.584 | -3.126 | -2.234 | 1.552 | 1.401 | 0.894 | -1.215 | -0.658 | -0.543 | -0.721 | -1.975 |