Model info
Transcription factorPax6
ModelPAX6_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
C
Motif rank
0
ConsensusWYMYRCWTSRnT
Best auROC (human)0.7494079589912269
Best auROC (mouse)0.7341201666331708
Peak sets in benchmark (human)6
Peak sets in benchmark (mouse)8
Aligned words500
TF familyPaired plus homeo domain{3.2.1}
TF subfamilyPAX-4/6{3.2.1.2}
MGI97490
EntrezGene18508
UniProt IDPAX6_MOUSE
UniProt ACP63015
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.17897
0.0005 5.9414750000000005
0.0001 7.45662
GTEx tissue expression atlas Pax6 expression
Motifs in JASPAR
PCM
ACGT
0162.016.037.0385.0
0211.0171.019.0299.0
03208.0234.025.033.0
0422.0283.020.0175.0
05143.035.0303.019.0
065.0402.083.010.0
07129.068.09.0294.0
0814.038.09.0439.0
097.0204.0284.05.0
10355.08.0118.019.0
1173.0179.0144.0104.0
1233.047.016.0404.0
PWM
ACGT
01-0.689-1.975-1.1891.117
02-2.3110.31-1.8180.865
030.5040.621-1.561-1.298
04-1.6810.81-1.770.333
050.133-1.2420.878-1.818
06-2.9611.16-0.403-2.394
070.031-0.599-2.4840.848
08-2.096-1.163-2.4841.247
09-2.6940.4850.814-2.961
101.036-2.584-0.057-1.818
11-0.5290.3550.14-0.181
12-1.298-0.958-1.9751.165