Model info
Transcription factorPAX8
ModelPAX8_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length14
Quality
D
Motif rank
0
ConsensusbYvAYYSRvSYRKd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words37
TF familyPaired domain only{3.2.2}
TF subfamilyPAX-2-like factors (partial homeobox){3.2.2.2}
HGNC8622
EntrezGene7849
UniProt IDPAX8_HUMAN
UniProt ACQ06710
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.72021
0.0005 5.27096
0.0001 6.384259999999999
GTEx tissue expression atlas PAX8 expression
ReMap ChIP-seq dataset list PAX8 datasets
Motifs in JASPAR
PCM
ACGT
014.2927.82714.67310.128
023.038.2483.53522.107
039.0914.02711.7832.02
0430.7482.5812.021.571
055.0516.6080.015.262
062.5255.8921.57126.933
073.14216.1616.6081.01
0817.172.13214.4763.142
0915.82312.124.9384.04
101.018.30425.0812.525
115.27419.5260.012.12
1214.3644.0418.5160.0
130.03.59116.83316.496
1412.7092.04816.0756.088
PWM
ACGT
01-0.668-0.1490.430.085
02-0.947-0.102-0.8260.82
03-0.0140.3880.225-1.243
041.139-1.068-1.243-1.41
05-0.5320.547-2.4190.467
06-1.084-0.4-1.411.011
07-0.9180.5210.547-1.667
080.579-1.2060.417-0.918
090.5010.251-0.551-0.718
10-1.667-0.0960.942-1.084
11-0.4950.701-2.4190.251
120.41-0.7180.65-2.419
13-2.419-0.8130.560.541
140.295-1.2340.516-0.371