Model info
Transcription factorPBX1
ModelPBX1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusdGAbKGACRR
Best auROC (human)0.9356148625830533
Best auROC (mouse)0.8829655287878803
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)36
Aligned words501
TF familyTALE-type homeo domain factors{3.1.4}
TF subfamilyPBX{3.1.4.4}
HGNC8632
EntrezGene5087
UniProt IDPBX1_HUMAN
UniProt ACP40424
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.9351199999999995
0.0005 5.72058
0.0001 7.26249
GTEx tissue expression atlas PBX1 expression
ReMap ChIP-seq dataset list PBX1 datasets
Motifs in JASPAR
PCM
ACGT
01105.044.0101.0250.0
0232.045.0417.06.0
03434.027.012.027.0
0421.0133.0170.0176.0
0536.038.086.0340.0
0619.06.0472.03.0
07342.01.0153.04.0
0818.0429.011.042.0
09342.011.0114.033.0
1054.051.0343.052.0
PWM
ACGT
01-0.172-1.022-0.210.687
02-1.328-1.01.196-2.819
031.236-1.489-2.234-1.489
04-1.7250.0610.3040.339
05-1.215-1.163-0.3680.993
06-1.818-2.8191.32-3.325
070.999-3.9030.2-3.126
08-1.8681.224-2.311-1.067
090.999-2.311-0.091-1.298
10-0.823-0.8791.002-0.86