Model info
| Transcription factor | PBX1 (GeneCards) | ||||||||
| Model | PBX1_HUMAN.H11MO.1.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 15 | ||||||||
| Quality | C | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | ddhWWGATKGATbdb | ||||||||
| Best auROC (human) | 0.733 | ||||||||
| Best auROC (mouse) | 0.759 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 36 | ||||||||
| Aligned words | 145 | ||||||||
| TF family | TALE-type homeo domain factors {3.1.4} | ||||||||
| TF subfamily | PBX {3.1.4.4} | ||||||||
| HGNC | HGNC:8632 | ||||||||
| EntrezGene | GeneID:5087 (SSTAR profile) | ||||||||
| UniProt ID | PBX1_HUMAN | ||||||||
| UniProt AC | P40424 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | PBX1 expression | ||||||||
| ReMap ChIP-seq dataset list | PBX1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 57.955 | 19.66 | 28.851 | 38.534 |
| 02 | 64.97 | 22.243 | 30.913 | 26.874 |
| 03 | 43.474 | 23.696 | 16.892 | 60.937 |
| 04 | 39.071 | 10.224 | 7.609 | 88.096 |
| 05 | 22.336 | 1.624 | 11.335 | 109.705 |
| 06 | 4.617 | 2.308 | 133.8 | 4.275 |
| 07 | 123.356 | 7.317 | 11.592 | 2.736 |
| 08 | 20.669 | 7.438 | 0.0 | 116.893 |
| 09 | 4.873 | 8.001 | 22.364 | 109.762 |
| 10 | 10.43 | 1.624 | 126.704 | 6.241 |
| 11 | 123.833 | 1.966 | 13.473 | 5.728 |
| 12 | 7.032 | 12.639 | 3.869 | 121.461 |
| 13 | 19.016 | 19.229 | 71.346 | 35.409 |
| 14 | 36.97 | 11.848 | 51.297 | 44.885 |
| 15 | 21.541 | 30.44 | 57.784 | 35.235 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.457 | -0.584 | -0.22 | 0.059 |
| 02 | 0.569 | -0.468 | -0.154 | -0.288 |
| 03 | 0.176 | -0.408 | -0.726 | 0.506 |
| 04 | 0.073 | -1.185 | -1.443 | 0.868 |
| 05 | -0.464 | -2.57 | -1.092 | 1.085 |
| 06 | -1.856 | -2.357 | 1.281 | -1.916 |
| 07 | 1.201 | -1.477 | -1.072 | -2.243 |
| 08 | -0.537 | -1.463 | -3.406 | 1.148 |
| 09 | -1.813 | -1.4 | -0.463 | 1.085 |
| 10 | -1.167 | -2.57 | 1.227 | -1.611 |
| 11 | 1.205 | -2.458 | -0.935 | -1.682 |
| 12 | -1.511 | -0.994 | -1.992 | 1.186 |
| 13 | -0.616 | -0.605 | 0.661 | -0.023 |
| 14 | 0.019 | -1.052 | 0.337 | 0.207 |
| 15 | -0.498 | -0.168 | 0.454 | -0.027 |