Model info
Transcription factorPBX1
ModelPBX1_HUMAN.H11MO.1.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length15
Quality
C
Motif rank
1
ConsensusddhWWGATKGATbdb
Best auROC (human)0.7333293980691399
Best auROC (mouse)0.7590499332115092
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)36
Aligned words145
TF familyTALE-type homeo domain factors{3.1.4}
TF subfamilyPBX{3.1.4.4}
HGNC8632
EntrezGene5087
UniProt IDPBX1_HUMAN
UniProt ACP40424
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.6548099999999994
0.0005 6.447509999999999
0.0001 8.10341
GTEx tissue expression atlas PBX1 expression
ReMap ChIP-seq dataset list PBX1 datasets
Motifs in JASPAR
PCM
ACGT
0157.95519.6628.85138.534
0264.9722.24330.91326.874
0343.47423.69616.89260.937
0439.07110.2247.60988.096
0522.3361.62411.335109.705
064.6172.308133.84.275
07123.3567.31711.5922.736
0820.6697.4380.0116.893
094.8738.00122.364109.762
1010.431.624126.7046.241
11123.8331.96613.4735.728
127.03212.6393.869121.461
1319.01619.22971.34635.409
1436.9711.84851.29744.885
1521.54130.4457.78435.235
PWM
ACGT
010.457-0.584-0.220.059
020.569-0.468-0.154-0.288
030.176-0.408-0.7260.506
040.073-1.185-1.4430.868
05-0.464-2.57-1.0921.085
06-1.856-2.3571.281-1.916
071.201-1.477-1.072-2.243
08-0.537-1.463-3.4061.148
09-1.813-1.4-0.4631.085
10-1.167-2.571.227-1.611
111.205-2.458-0.935-1.682
12-1.511-0.994-1.9921.186
13-0.616-0.6050.661-0.023
140.019-1.0520.3370.207
15-0.498-0.1680.454-0.027