Model info
Transcription factorPbx1
ModelPBX1_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusnWGAYKGRYRRv
Best auROC (human)0.8511303989869051
Best auROC (mouse)0.9149123969454549
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)36
Aligned words508
TF familyTALE-type homeo domain factors{3.1.4}
TF subfamilyPBX{3.1.4.4}
MGI97495
EntrezGene18514
UniProt IDPBX1_MOUSE
UniProt ACP41778
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.817875
0.0005 11.70902
0.0001 15.264710000000001
GTEx tissue expression atlas Pbx1 expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0124.03.07.0105.013.06.010.094.014.013.09.095.011.01.012.083.0
020.02.060.00.00.00.023.00.00.01.037.00.03.02.0369.03.0
033.00.00.00.05.00.00.00.0486.01.00.02.03.00.00.00.0
0412.0122.074.0289.00.01.00.00.00.00.00.00.00.01.00.01.0
051.00.00.011.023.04.026.071.01.00.02.071.012.03.041.0234.0
060.00.031.06.00.00.05.02.04.00.060.05.08.04.0279.096.0
079.00.02.01.04.00.00.00.0251.02.0120.02.093.03.02.011.0
086.0199.01.0151.00.04.00.01.00.0113.00.011.00.014.00.00.0
095.00.00.01.0232.06.056.036.01.00.00.00.018.04.0108.033.0
1022.08.0210.016.06.00.03.01.024.014.097.029.016.03.041.010.0
1112.017.034.05.04.06.010.05.057.0132.0108.054.014.013.019.010.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.26-2.234-1.4541.203-0.86-1.6-1.1141.093-0.788-0.86-1.2151.104-1.022-3.126-0.9380.969
02-4.4-2.5840.646-4.4-4.4-4.4-0.302-4.4-4.4-3.1260.167-4.4-2.234-2.5842.457-2.234
03-2.234-4.4-4.4-4.4-1.77-4.4-4.4-4.42.733-3.126-4.4-2.584-2.234-4.4-4.4-4.4
04-0.9381.3530.8552.213-4.4-3.126-4.4-4.4-4.4-4.4-4.4-4.4-4.4-3.126-4.4-3.126
05-3.126-4.4-4.4-1.022-0.302-1.975-0.1810.814-3.126-4.4-2.5840.814-0.938-2.2340.2692.003
06-4.4-4.4-0.008-1.6-4.4-4.4-1.77-2.584-1.975-4.40.646-1.77-1.328-1.9752.1781.114
07-1.215-4.4-2.584-3.126-1.975-4.4-4.4-4.42.073-2.5841.336-2.5841.082-2.234-2.584-1.022
08-1.61.841-3.1261.565-4.4-1.975-4.4-3.126-4.41.276-4.4-1.022-4.4-0.788-4.4-4.4
09-1.77-4.4-4.4-3.1261.994-1.60.5780.14-3.126-4.4-4.4-4.4-0.543-1.9751.2310.054
10-0.346-1.3281.895-0.658-1.6-4.4-2.234-3.126-0.26-0.7881.124-0.074-0.658-2.2340.269-1.114
11-0.938-0.5990.083-1.77-1.975-1.6-1.114-1.770.5951.4311.2310.542-0.788-0.86-0.49-1.114