Model info
Transcription factorPbx1
ModelPBX1_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
0
ConsensusWGAKTGRCRKv
Best auROC (human)0.8580007945268618
Best auROC (mouse)0.9024659608449436
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)36
Aligned words500
TF familyTALE-type homeo domain factors{3.1.4}
TF subfamilyPBX{3.1.4.4}
MGI97495
EntrezGene18514
UniProt IDPBX1_MOUSE
UniProt ACP41778
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.555125
0.0005 5.51896
0.0001 7.5483899999999995
GTEx tissue expression atlas Pbx1 expression
Motifs in JASPAR
PCM
ACGT
0153.022.037.0388.0
026.012.0479.03.0
03484.02.06.08.0
0410.098.0140.0252.0
0521.011.050.0418.0
069.01.0471.019.0
07339.04.0153.04.0
082.0445.05.048.0
09322.08.0111.059.0
1038.033.0385.044.0
1173.0170.0218.039.0
PWM
ACGT
01-0.841-1.681-1.1891.124
02-2.819-2.2341.334-3.325
031.345-3.573-2.819-2.584
04-2.394-0.240.1120.695
05-1.725-2.311-0.8981.199
06-2.484-3.9031.317-1.818
070.99-3.1260.2-3.126
08-3.5731.261-2.961-0.938
090.939-2.584-0.117-0.737
10-1.163-1.2981.117-1.022
11-0.5290.3040.551-1.138