Model info
Transcription factorPbx1
ModelPBX1_MOUSE.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
1
ConsensusbbbYSATTGGYhd
Best auROC (human)0.8756310327206996
Best auROC (mouse)0.9153377341416298
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)36
Aligned words500
TF familyTALE-type homeo domain factors{3.1.4}
TF subfamilyPBX{3.1.4.4}
MGI97495
EntrezGene18514
UniProt IDPBX1_MOUSE
UniProt ACP41778
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.15836
0.0005 6.0366599999999995
0.0001 7.79907
GTEx tissue expression atlas Pbx1 expression
Motifs in JASPAR
PCM
ACGT
0159.0215.066.0160.0
0237.088.0118.0257.0
0353.0216.0114.0117.0
0412.093.029.0366.0
0514.0115.0330.041.0
06481.012.03.04.0
076.030.017.0447.0
084.00.03.0493.0
096.00.0455.039.0
10129.04.0360.07.0
1145.0304.014.0137.0
1296.0118.053.0233.0
13165.054.0224.057.0
PWM
ACGT
01-0.7370.537-0.6280.244
02-1.189-0.346-0.0570.714
03-0.8410.542-0.091-0.065
04-2.234-0.291-1.4211.066
05-2.096-0.0820.963-1.09
061.338-2.234-3.325-3.126
07-2.819-1.389-1.921.265
08-3.126-4.4-3.3251.363
09-2.819-4.41.283-1.138
100.031-3.1261.05-2.694
11-1.00.881-2.0960.091
12-0.26-0.057-0.8410.617
130.275-0.8230.578-0.771