Model info
Transcription factorPbx1
ModelPBX1_MOUSE.H11MO.2.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length15
Quality
C
Motif rank
2
ConsensusddhWWGATKGATbdb
Best auROC (human)0.7333293980691399
Best auROC (mouse)0.7590499332115092
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)36
Aligned words145
TF familyTALE-type homeo domain factors{3.1.4}
TF subfamilyPBX{3.1.4.4}
MGI97495
EntrezGene18514
UniProt IDPBX1_MOUSE
UniProt ACP41778
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.590859999999999
0.0005 6.38516
0.0001 8.04481
GTEx tissue expression atlas Pbx1 expression
Motifs in JASPAR
PCM
ACGT
0157.95519.6628.85138.534
0264.9722.24330.91326.874
0343.47423.69616.89260.937
0439.07110.2247.60988.096
0522.3361.62411.335109.705
064.6172.308133.84.275
07123.3567.31711.5922.736
0820.6697.4380.0116.893
094.8738.00122.364109.762
1010.431.624126.7046.241
11123.8331.96613.4735.728
127.03212.6393.869121.461
1319.01619.22971.34635.409
1436.9711.84851.29744.885
1521.54130.4457.78435.235
PWM
ACGT
010.457-0.584-0.220.059
020.569-0.468-0.154-0.288
030.176-0.408-0.7260.506
040.073-1.185-1.4430.868
05-0.464-2.57-1.0921.085
06-1.856-2.3571.281-1.916
071.201-1.477-1.072-2.243
08-0.537-1.463-3.4061.148
09-1.813-1.4-0.4631.085
10-1.167-2.571.227-1.611
111.205-2.458-0.935-1.682
12-1.511-0.994-1.9921.186
13-0.616-0.6050.661-0.023
140.019-1.0520.3370.207
15-0.498-0.1680.454-0.027