Model info
Transcription factorPBX2
ModelPBX2_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length15
Quality
C
Motif rank
0
ConsensusKvMhKTGATTGWWKb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words19
TF familyTALE-type homeo domain factors{3.1.4}
TF subfamilyPBX{3.1.4.4}
HGNC8633
EntrezGene5089
UniProt IDPBX2_HUMAN
UniProt ACP40425
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.74956
0.0005 6.4409600000000005
0.0001 7.868960000000001
GTEx tissue expression atlas PBX2 expression
ReMap ChIP-seq dataset list PBX2 datasets
Motifs in JASPAR
PCM
ACGT
010.7522.7966.6448.809
028.2971.9247.0951.684
0310.2223.9683.8480.962
049.8613.1271.0824.93
051.0820.9626.13310.823
061.0820.9620.016.956
070.9620.015.5132.525
0815.0320.03.0060.962
090.03.1270.015.873
102.0440.00.016.956
110.00.014.9114.089
1213.4680.6012.0442.886
135.1712.1650.011.665
143.1270.08.2977.576
153.2474.4497.5763.728
PWM
ACGT
01-1.305-0.440.2970.554
020.499-0.7240.356-0.819
030.692-0.154-0.18-1.173
040.658-0.351-1.1040.032
05-1.104-1.1730.2250.745
06-1.104-1.173-2.0091.171
07-1.173-2.0091.086-0.52
081.056-2.009-0.382-1.173
09-2.009-0.351-2.0091.108
10-0.68-2.009-2.0091.171
11-2.009-2.0091.048-0.128
120.951-1.412-0.68-0.415
130.074-0.637-2.0090.816
14-0.351-2.0090.4990.415
15-0.32-0.0560.415-0.206