Model info
| Transcription factor | Pbx3 | ||||||||
| Model | PBX3_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 14 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bbbYSATTGGYddv | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 1885 | ||||||||
| TF family | TALE-type homeo domain factors {3.1.4} | ||||||||
| TF subfamily | PBX {3.1.4.4} | ||||||||
| MGI | MGI:97496 | ||||||||
| EntrezGene | GeneID:18516 (SSTAR profile) | ||||||||
| UniProt ID | PBX3_MOUSE | ||||||||
| UniProt AC | O35317 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Pbx3 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 202.184 | 700.668 | 314.819 | 627.846 |
| 02 | 135.557 | 405.945 | 512.668 | 791.347 |
| 03 | 113.088 | 721.09 | 330.884 | 680.456 |
| 04 | 115.094 | 329.83 | 40.287 | 1360.306 |
| 05 | 10.837 | 394.544 | 1338.816 | 101.319 |
| 06 | 1801.734 | 0.0 | 8.829 | 34.955 |
| 07 | 0.0 | 57.538 | 153.712 | 1634.267 |
| 08 | 0.954 | 0.0 | 14.4 | 1830.163 |
| 09 | 0.0 | 1.712 | 1825.732 | 18.074 |
| 10 | 689.789 | 0.481 | 1155.247 | 0.0 |
| 11 | 240.749 | 953.456 | 45.487 | 605.826 |
| 12 | 335.907 | 292.972 | 357.974 | 858.665 |
| 13 | 332.538 | 173.981 | 957.016 | 381.982 |
| 14 | 425.073 | 330.877 | 790.546 | 299.022 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.82 | 0.416 | -0.38 | 0.307 |
| 02 | -1.215 | -0.127 | 0.105 | 0.538 |
| 03 | -1.394 | 0.445 | -0.331 | 0.387 |
| 04 | -1.376 | -0.334 | -2.397 | 1.079 |
| 05 | -3.595 | -0.156 | 1.063 | -1.502 |
| 06 | 1.359 | -5.507 | -3.767 | -2.532 |
| 07 | -5.507 | -2.054 | -1.091 | 1.262 |
| 08 | -5.096 | -5.507 | -3.348 | 1.375 |
| 09 | -5.507 | -4.86 | 1.372 | -3.145 |
| 10 | 0.401 | -5.279 | 0.915 | -5.507 |
| 11 | -0.647 | 0.724 | -2.28 | 0.271 |
| 12 | -0.316 | -0.452 | -0.253 | 0.619 |
| 13 | -0.326 | -0.969 | 0.727 | -0.188 |
| 14 | -0.082 | -0.331 | 0.537 | -0.432 |