Model info
Transcription factorPDX1
ModelPDX1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
A
Motif rank
0
ConsensusTGAYWRAKK
Best auROC (human)0.9598585799404623
Best auROC (mouse)0.8138893323553282
Peak sets in benchmark (human)10
Peak sets in benchmark (mouse)4
Aligned words494
TF familyHOX-related factors{3.1.1}
TF subfamilyPDX{3.1.1.15}
HGNC6107
EntrezGene3651
UniProt IDPDX1_HUMAN
UniProt ACP52945
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.52064
0.0005 6.3482400000000005
0.0001 7.803335000000001
GTEx tissue expression atlas PDX1 expression
ReMap ChIP-seq dataset list PDX1 datasets
Motifs in JASPAR
PCM
ACGT
0195.02.015.0382.0
0238.013.0424.019.0
03471.09.02.012.0
0414.074.031.0375.0
0589.07.072.0326.0
0680.032.0372.010.0
07441.030.017.06.0
0828.032.077.0357.0
0934.038.0278.0144.0
PWM
ACGT
01-0.259-3.562-2.0221.121
02-1.151-2.1511.225-1.806
031.329-2.473-3.562-2.222
04-2.085-0.504-1.3461.102
05-0.323-2.683-0.5310.963
06-0.427-1.3161.094-2.382
071.264-1.377-1.908-2.807
08-1.443-1.316-0.4651.053
09-1.258-1.1510.8040.152