Model info
Transcription factorPDX1
ModelPDX1_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
A
Motif rank
1
ConsensusdYTAATKRb
Best auROC (human)0.8236673134454604
Best auROC (mouse)0.8270020028568046
Peak sets in benchmark (human)10
Peak sets in benchmark (mouse)4
Aligned words504
TF familyHOX-related factors{3.1.1}
TF subfamilyPDX{3.1.1.15}
HGNC6107
EntrezGene3651
UniProt IDPDX1_HUMAN
UniProt ACP52945
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.761045
0.0005 6.454969999999999
0.0001 7.880179999999999
GTEx tissue expression atlas PDX1 expression
ReMap ChIP-seq dataset list PDX1 datasets
Motifs in JASPAR
PCM
ACGT
01259.021.098.0120.0
0213.080.063.0342.0
0343.06.03.0446.0
04423.014.057.04.0
05484.04.09.01.0
0613.03.039.0443.0
074.04.0195.0295.0
08327.08.0149.014.0
0941.0143.0123.0191.0
PWM
ACGT
010.726-1.721-0.236-0.036
02-2.159-0.435-0.6691.003
03-1.04-2.815-3.3211.267
041.214-2.092-0.767-3.122
051.349-3.122-2.48-3.9
06-2.159-3.321-1.1341.26
07-3.122-3.1220.4440.856
080.958-2.580.178-2.092
09-1.0860.137-0.0120.424