Model info
Transcription factorPdx1
ModelPDX1_MOUSE.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
B
Motif rank
0
ConsensusvYTAATGRb
Best auROC (human)0.7524590108214946
Best auROC (mouse)0.8952755559110801
Peak sets in benchmark (human)10
Peak sets in benchmark (mouse)4
Aligned words500
TF familyHOX-related factors{3.1.1}
TF subfamilyPDX{3.1.1.15}
MGI102851
EntrezGene18609
UniProt IDPDX1_MOUSE
UniProt ACP52946
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.3823300000000005
0.0005 6.321154999999999
0.0001 7.9673050000000005
GTEx tissue expression atlas Pdx1 expression
Motifs in JASPAR
PCM
ACGT
01191.0118.0133.058.0
0226.0187.026.0261.0
0342.00.00.0458.0
04483.04.011.02.0
05498.01.00.01.0
061.02.09.0488.0
073.07.0388.0102.0
08355.07.0113.025.0
0922.0196.0137.0145.0
PWM
ACGT
010.42-0.0570.061-0.754
02-1.5250.399-1.5250.73
03-1.067-4.4-4.41.29
041.343-3.126-2.311-3.573
051.373-3.903-4.4-3.903
06-3.903-3.573-2.4841.353
07-3.325-2.6941.124-0.201
081.036-2.694-0.1-1.561
09-1.6810.4450.0910.147