Model info
| Transcription factor | PHOX2A (GeneCards) | ||||||||
| Model | PHX2A_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | TAATYTAATTA | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 7919 | ||||||||
| TF family | Paired-related HD factors {3.1.3} | ||||||||
| TF subfamily | PHOX {3.1.3.18} | ||||||||
| HGNC | HGNC:691 | ||||||||
| EntrezGene | GeneID:401 (SSTAR profile) | ||||||||
| UniProt ID | PHX2A_HUMAN | ||||||||
| UniProt AC | O14813 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | PHOX2A expression | ||||||||
| ReMap ChIP-seq dataset list | PHOX2A datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 554.75 | 218.75 | 128.75 | 7009.75 |
| 02 | 7287.25 | 61.25 | 343.25 | 220.25 |
| 03 | 7831.5 | 30.5 | 27.5 | 22.5 |
| 04 | 276.25 | 1263.25 | 121.25 | 6251.25 |
| 05 | 127.0 | 2803.0 | 754.0 | 4228.0 |
| 06 | 0.0 | 2584.0 | 0.0 | 5328.0 |
| 07 | 6494.0 | 109.0 | 1263.0 | 46.0 |
| 08 | 7820.5 | 19.5 | 52.5 | 19.5 |
| 09 | 0.75 | 1.75 | 1.75 | 7907.75 |
| 10 | 227.5 | 101.5 | 9.5 | 7573.5 |
| 11 | 7248.5 | 81.5 | 178.5 | 403.5 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.268 | -2.193 | -2.716 | 1.264 |
| 02 | 1.303 | -3.44 | -1.746 | -2.186 |
| 03 | 1.375 | -4.102 | -4.198 | -4.382 |
| 04 | -1.962 | -0.448 | -2.775 | 1.15 |
| 05 | -2.729 | 0.348 | -0.963 | 0.759 |
| 06 | -6.783 | 0.267 | -6.783 | 0.99 |
| 07 | 1.188 | -2.879 | -0.448 | -3.715 |
| 08 | 1.374 | -4.512 | -3.588 | -4.512 |
| 09 | -6.494 | -6.206 | -6.206 | 1.385 |
| 10 | -2.154 | -2.949 | -5.128 | 1.342 |
| 11 | 1.298 | -3.163 | -2.394 | -1.585 |