Model info
Transcription factorPHOX2B
ModelPHX2B_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensusWAATYTAATTA
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words24552
TF familyPaired-related HD factors{3.1.3}
TF subfamilyPHOX{3.1.3.18}
HGNC9143
EntrezGene8929
UniProt IDPHX2B_HUMAN
UniProt ACQ99453
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.26751
0.0005 5.55204
0.0001 8.05125
GTEx tissue expression atlas PHOX2B expression
ReMap ChIP-seq dataset list PHOX2B datasets
Motifs in JASPAR
PCM
ACGT
012601.3451641.4011333.19319431.915
0222735.088228.9881232.943810.835
0324678.479106.912122.71599.748
04897.1733849.034428.29319833.353
05616.0419156.5022452.15712783.154
060.08161.9070.016845.947
0720169.202444.6464112.625281.381
0824492.41990.723297.962126.749
096.85610.1215.5524985.326
10670.411472.6551.10123813.692
1120723.041982.811286.2812015.721
PWM
ACGT
01-0.876-1.336-1.5441.134
021.291-3.296-1.622-2.04
031.373-4.046-3.911-4.113
04-1.939-0.485-2.6751.154
05-2.3140.381-0.9350.715
06-7.8120.266-7.8120.991
071.171-2.638-0.419-3.092
081.365-4.206-3.036-3.879
09-6.502-6.203-6.6511.385
10-2.229-2.577-4.7591.337
111.198-1.848-1.58-1.131