Model info
Transcription factorPITX1
ModelPITX1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
D
Motif rank
0
ConsensusvRGGMTTWd
Best auROC (human)0.5442492648368433
Best auROC (mouse)0.8847300369395864
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)4
Aligned words500
TF familyPaired-related HD factors{3.1.3}
TF subfamilyPITX{3.1.3.19}
HGNC9004
EntrezGene5307
UniProt IDPITX1_HUMAN
UniProt ACP78337
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.626035
0.0005 6.5964849999999995
0.0001 7.857245000000001
GTEx tissue expression atlas PITX1 expression
ReMap ChIP-seq dataset list PITX1 datasets
Motifs in JASPAR
PCM
ACGT
01187.072.0175.066.0
02114.012.0285.089.0
0329.00.0466.05.0
0418.04.0474.04.0
05296.0195.02.07.0
061.02.01.0496.0
072.033.09.0456.0
08334.01.08.0157.0
09229.031.0184.056.0
PWM
ACGT
010.399-0.5430.333-0.628
02-0.091-2.2340.817-0.335
03-1.421-4.41.307-2.961
04-1.868-3.1261.324-3.126
050.8550.44-3.573-2.694
06-3.903-3.573-3.9031.369
07-3.573-1.298-2.4841.285
080.975-3.903-2.5840.225
090.6-1.3580.383-0.788