Model info
| Transcription factor | PITX1 (GeneCards) | ||||||||
| Model | PITX1_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vRGGMTTWd | ||||||||
| Best auROC (human) | 0.544 | ||||||||
| Best auROC (mouse) | 0.885 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 4 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Paired-related HD factors {3.1.3} | ||||||||
| TF subfamily | PITX {3.1.3.19} | ||||||||
| HGNC | HGNC:9004 | ||||||||
| EntrezGene | GeneID:5307 (SSTAR profile) | ||||||||
| UniProt ID | PITX1_HUMAN | ||||||||
| UniProt AC | P78337 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | PITX1 expression | ||||||||
| ReMap ChIP-seq dataset list | PITX1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 187.0 | 72.0 | 175.0 | 66.0 |
| 02 | 114.0 | 12.0 | 285.0 | 89.0 |
| 03 | 29.0 | 0.0 | 466.0 | 5.0 |
| 04 | 18.0 | 4.0 | 474.0 | 4.0 |
| 05 | 296.0 | 195.0 | 2.0 | 7.0 |
| 06 | 1.0 | 2.0 | 1.0 | 496.0 |
| 07 | 2.0 | 33.0 | 9.0 | 456.0 |
| 08 | 334.0 | 1.0 | 8.0 | 157.0 |
| 09 | 229.0 | 31.0 | 184.0 | 56.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.399 | -0.543 | 0.333 | -0.628 |
| 02 | -0.091 | -2.234 | 0.817 | -0.335 |
| 03 | -1.421 | -4.4 | 1.307 | -2.961 |
| 04 | -1.868 | -3.126 | 1.324 | -3.126 |
| 05 | 0.855 | 0.44 | -3.573 | -2.694 |
| 06 | -3.903 | -3.573 | -3.903 | 1.369 |
| 07 | -3.573 | -1.298 | -2.484 | 1.285 |
| 08 | 0.975 | -3.903 | -2.584 | 0.225 |
| 09 | 0.6 | -1.358 | 0.383 | -0.788 |