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Model info
Transcription factorPitx1
ModelPITX1_MOUSE.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
C
Motif rank
0
ConsensusnvdGGMTTAdn
Best auROC (human)0.523
Best auROC (mouse)0.887
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)4
Aligned words390
TF familyPaired-related HD factors {3.1.3}
TF subfamilyPITX {3.1.3.19}
MGIMGI:107374
EntrezGeneGeneID:18740
(SSTAR profile)
UniProt IDPITX1_MOUSE
UniProt ACP70314
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 11.22387
0.0005 12.758469999999999
0.0001 15.410150000000002
GTEx tissue expression atlas Pitx1 expression
Motifs in JASPAR
MA0682.1 (Pitx1; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0154.019.044.011.051.016.010.017.039.019.033.017.016.013.028.03.0
0241.09.093.017.023.01.012.031.025.08.067.015.012.06.026.04.0
0313.01.086.01.09.01.013.01.039.02.0150.07.08.00.059.00.0
042.01.066.00.00.00.04.00.019.010.0275.04.00.00.09.00.0
058.013.00.00.08.03.00.00.0231.0114.04.05.01.01.02.00.0
060.00.00.0248.00.00.00.0131.00.00.00.06.00.00.00.05.0
070.00.00.00.00.00.00.00.00.00.00.00.02.024.02.0362.0
081.00.00.01.020.00.00.04.02.00.00.00.0280.01.01.080.0
09138.011.0112.042.00.00.00.01.00.00.01.00.047.07.023.08.0
1061.050.049.025.08.03.01.06.027.046.031.032.014.014.010.013.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.787-0.2450.584-0.7780.73-0.413-0.87-0.3540.464-0.2450.299-0.354-0.413-0.6160.137-1.993
020.514-0.9711.328-0.354-0.057-2.892-0.6930.2370.025-1.0841.002-0.476-0.693-1.3570.064-1.733
03-0.616-2.8921.25-2.892-0.971-2.892-0.616-2.8920.464-2.3451.804-1.211-1.084-4.1950.875-4.195
04-2.345-2.8920.987-4.195-4.195-4.195-1.733-4.195-0.245-0.872.409-1.733-4.195-4.195-0.971-4.195
05-1.084-0.616-4.195-4.195-1.084-1.993-4.195-4.1952.2351.531-1.733-1.527-2.892-2.892-2.345-4.195
06-4.195-4.195-4.1952.306-4.195-4.195-4.1951.669-4.195-4.195-4.195-1.357-4.195-4.195-4.195-1.527
07-4.195-4.195-4.195-4.195-4.195-4.195-4.195-4.195-4.195-4.195-4.195-4.195-2.345-0.015-2.3452.684
08-2.892-4.195-4.195-2.892-0.195-4.195-4.195-1.733-2.345-4.195-4.195-4.1952.427-2.892-2.8921.178
091.721-0.7781.5130.538-4.195-4.195-4.195-2.892-4.195-4.195-2.892-4.1950.649-1.211-0.057-1.084
100.9080.7110.6910.025-1.084-1.993-2.892-1.3570.1010.6280.2370.269-0.543-0.543-0.87-0.616