Model info
Transcription factorPknox1
ModelPKNX1_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
0
ConsensusWGAbKGRCRSv
Best auROC (human)
Best auROC (mouse)0.9673791552090969
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)19
Aligned words480
TF familyTALE-type homeo domain factors{3.1.4}
TF subfamilyPKNOX{3.1.4.5}
MGI1201409
EntrezGene18771
UniProt IDPKNX1_MOUSE
UniProt ACO70477
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.677815
0.0005 5.567315
0.0001 7.4038699999999995
GTEx tissue expression atlas Pknox1 expression
Motifs in JASPAR
PCM
ACGT
0171.043.050.0316.0
0220.025.0430.05.0
03456.06.013.05.0
0411.0129.0159.0181.0
0549.029.055.0347.0
0611.02.0462.05.0
07299.03.0174.04.0
0813.0449.02.016.0
09302.025.0104.049.0
1026.056.0353.045.0
1171.0169.0195.045.0
PWM
ACGT
01-0.516-1.004-0.8580.96
02-1.73-1.5211.267-2.922
031.326-2.78-2.123-2.922
04-2.2710.0710.2780.407
05-0.877-1.381-0.7651.053
06-2.271-3.5351.339-2.922
070.905-3.2870.368-3.088
08-2.1231.31-3.535-1.936
090.915-1.521-0.141-0.877
10-1.485-0.7481.071-0.96
11-0.5160.3390.481-0.96