Model info
| Transcription factor | Pou6f1 | ||||||||
| Model | PO6F1_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 13 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nATAATTTATGCR | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 14 | ||||||||
| TF family | POU domain factors {3.1.10} | ||||||||
| TF subfamily | POU6 (Brn-5-like factors) {3.1.10.6} | ||||||||
| MGI | MGI:102935 | ||||||||
| EntrezGene | GeneID:19009 (SSTAR profile) | ||||||||
| UniProt ID | PO6F1_MOUSE | ||||||||
| UniProt AC | Q07916 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Pou6f1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2.0 | 7.0 | 3.0 | 2.0 |
| 02 | 13.0 | 1.0 | 0.0 | 0.0 |
| 03 | 0.0 | 0.0 | 0.0 | 14.0 |
| 04 | 12.0 | 0.0 | 0.0 | 2.0 |
| 05 | 14.0 | 0.0 | 0.0 | 0.0 |
| 06 | 5.0 | 0.0 | 0.0 | 9.0 |
| 07 | 0.0 | 2.0 | 0.0 | 12.0 |
| 08 | 0.0 | 0.0 | 0.0 | 14.0 |
| 09 | 13.0 | 0.0 | 0.0 | 1.0 |
| 10 | 0.0 | 0.0 | 0.0 | 14.0 |
| 11 | 0.0 | 0.0 | 14.0 | 0.0 |
| 12 | 0.0 | 12.0 | 0.0 | 2.0 |
| 13 | 7.0 | 2.0 | 5.0 | 0.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.447 | 0.611 | -0.128 | -0.447 |
| 02 | 1.189 | -0.919 | -1.841 | -1.841 |
| 03 | -1.841 | -1.841 | -1.841 | 1.26 |
| 04 | 1.113 | -1.841 | -1.841 | -0.447 |
| 05 | 1.26 | -1.841 | -1.841 | -1.841 |
| 06 | 0.308 | -1.841 | -1.841 | 0.843 |
| 07 | -1.841 | -0.447 | -1.841 | 1.113 |
| 08 | -1.841 | -1.841 | -1.841 | 1.26 |
| 09 | 1.189 | -1.841 | -1.841 | -0.919 |
| 10 | -1.841 | -1.841 | -1.841 | 1.26 |
| 11 | -1.841 | -1.841 | 1.26 | -1.841 |
| 12 | -1.841 | 1.113 | -1.841 | -0.447 |
| 13 | 0.611 | -0.447 | 0.308 | -1.841 |