Model info
Transcription factorPPARA
ModelPPARA_HUMAN.H11MO.1.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
B
Motif rank
1
ConsensusMRAGGKCAd
Best auROC (human)0.5530189567363994
Best auROC (mouse)0.8326991102355004
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)20
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyPPAR (NR1C){2.1.2.5}
HGNC9232
EntrezGene5465
UniProt IDPPARA_HUMAN
UniProt ACQ07869
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.47147
0.0005 6.29927
0.0001 7.94262
GTEx tissue expression atlas PPARA expression
ReMap ChIP-seq dataset list PPARA datasets
Motifs in JASPAR
PCM
ACGT
01360.075.036.029.0
02296.071.0130.03.0
03442.01.056.01.0
0425.03.0467.05.0
054.04.0442.050.0
066.052.0105.0337.0
072.0443.040.015.0
08481.03.07.09.0
09108.069.0248.075.0
PWM
ACGT
011.05-0.503-1.215-1.421
020.855-0.5560.039-3.325
031.254-3.903-0.788-3.903
04-1.561-3.3251.309-2.961
05-3.126-3.1261.254-0.898
06-2.819-0.86-0.1720.984
07-3.5731.256-1.114-2.034
081.338-3.325-2.694-2.484
09-0.144-0.5840.679-0.503