Model info
Transcription factorPpara
ModelPPARA_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
A
Motif rank
0
ConsensushWbWRdGbvARAGGKbR
Best auROC (human)0.5847439939549047
Best auROC (mouse)0.957643320689455
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)20
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyPPAR (NR1C){2.1.2.5}
MGI104740
EntrezGene19013
UniProt IDPPARA_MOUSE
UniProt ACP23204
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.02761
0.0005 5.94186
0.0001 7.842560000000001
GTEx tissue expression atlas Ppara expression
Motifs in JASPAR
PCM
ACGT
01269.0109.057.065.0
02286.025.050.0139.0
0357.0199.0186.058.0
0465.054.050.0331.0
05236.08.0229.027.0
0652.05.0391.052.0
0746.010.0426.018.0
0839.080.0178.0203.0
0954.0244.0151.051.0
10456.010.027.07.0
11323.022.0130.025.0
12420.01.066.013.0
1339.03.0452.06.0
1431.05.0402.062.0
1519.042.0117.0322.0
1644.0261.0114.081.0
17367.039.053.041.0
PWM
ACGT
010.76-0.135-0.771-0.643
020.821-1.561-0.8980.105
03-0.7710.460.393-0.754
04-0.643-0.823-0.8980.966
050.63-2.5840.6-1.489
06-0.86-2.9611.132-0.86
07-0.979-2.3941.217-1.868
08-1.138-0.4390.350.48
09-0.8230.6630.187-0.879
101.285-2.394-1.489-2.694
110.942-1.6810.039-1.561
121.203-3.903-0.628-2.163
13-1.138-3.3251.276-2.819
14-1.358-2.9611.16-0.689
15-1.818-1.067-0.0650.939
16-1.0220.73-0.091-0.427
171.069-1.138-0.841-1.09