Model info
Transcription factorPPARG
ModelPPARG_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
A
Motif rank
0
ConsensusnhWbYRGRnbARAGKKbRn
Best auROC (human)0.9634724036765148
Best auROC (mouse)0.9633715969024659
Peak sets in benchmark (human)53
Peak sets in benchmark (mouse)114
Aligned words486
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyPPAR (NR1C){2.1.2.5}
HGNC9236
EntrezGene5468
UniProt IDPPARG_HUMAN
UniProt ACP37231
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.30386
0.0005 12.06551
0.0001 15.72141
GTEx tissue expression atlas PPARG expression
ReMap ChIP-seq dataset list PPARG datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0172.014.018.016.080.022.03.022.053.029.020.014.029.036.012.044.0
02144.07.013.070.048.01.06.046.027.00.07.019.027.02.06.061.0
0323.099.092.032.03.01.01.05.02.014.015.01.010.080.086.020.0
047.03.03.025.020.022.06.0146.014.020.026.0134.08.05.014.031.0
0521.03.023.02.041.03.02.04.029.03.015.02.0105.02.0213.016.0
0616.03.0164.013.00.00.011.00.010.02.0205.036.01.00.021.02.0
076.00.019.02.01.00.04.00.078.08.0307.08.07.01.038.05.0
0829.013.044.06.02.00.03.04.050.068.0124.0126.07.03.04.01.0
095.041.026.016.018.040.010.016.025.083.053.014.07.042.068.020.0
1042.03.07.03.0189.06.03.08.0138.03.013.03.054.02.08.02.0
11273.010.0116.024.08.00.03.03.021.02.07.01.06.02.06.02.0
12263.00.043.02.012.00.02.00.0101.01.030.00.016.03.010.01.0
1338.00.0349.05.00.00.03.01.015.01.068.01.01.00.02.00.0
142.01.048.03.00.00.01.00.031.08.0323.060.00.00.07.00.0
153.01.023.06.02.01.03.03.017.043.0134.0185.02.01.012.048.0
162.011.08.03.013.017.02.014.038.066.036.032.023.0130.061.028.0
1749.06.013.08.0168.011.021.024.074.06.015.012.043.08.019.07.0
1897.076.0108.053.06.09.03.013.015.022.017.014.09.09.012.021.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.86-0.756-0.511-0.6260.965-0.314-2.202-0.3140.555-0.042-0.407-0.756-0.0420.172-0.9060.371
021.55-1.423-0.8280.8320.457-3.095-1.5680.415-0.112-4.373-1.423-0.458-0.112-2.552-1.5680.695
03-0.271.1771.1040.056-2.202-3.095-3.095-1.738-2.552-0.756-0.689-3.095-1.0820.9651.037-0.407
04-1.423-2.202-2.202-0.188-0.407-0.314-1.5681.564-0.756-0.407-0.1491.479-1.296-1.738-0.7560.024
05-0.359-2.202-0.27-2.5520.301-2.202-2.552-1.944-0.042-2.202-0.689-2.5521.235-2.5521.941-0.626
06-0.626-2.2021.68-0.828-4.373-4.373-0.99-4.373-1.082-2.5521.9030.172-3.095-4.373-0.359-2.552
07-1.568-4.373-0.458-2.552-3.095-4.373-1.944-4.3730.939-1.2962.306-1.296-1.423-3.0950.226-1.738
08-0.042-0.8280.371-1.568-2.552-4.373-2.202-1.9440.4980.8031.4011.417-1.423-2.202-1.944-3.095
09-1.7380.301-0.149-0.626-0.5110.276-1.082-0.626-0.1881.0010.555-0.756-1.4230.3250.803-0.407
100.325-2.202-1.423-2.2021.822-1.568-2.202-1.2961.508-2.202-0.828-2.2020.574-2.552-1.296-2.552
112.189-1.0821.335-0.228-1.296-4.373-2.202-2.202-0.359-2.552-1.423-3.095-1.568-2.552-1.568-2.552
122.151-4.3730.348-2.552-0.906-4.373-2.552-4.3731.197-3.095-0.008-4.373-0.626-2.202-1.082-3.095
130.226-4.3732.434-1.738-4.373-4.373-2.202-3.095-0.689-3.0950.803-3.095-3.095-4.373-2.552-4.373
14-2.552-3.0950.457-2.202-4.373-4.373-3.095-4.3730.024-1.2962.3570.679-4.373-4.373-1.423-4.373
15-2.202-3.095-0.27-1.568-2.552-3.095-2.202-2.202-0.5670.3481.4791.8-2.552-3.095-0.9060.457
16-2.552-0.99-1.296-2.202-0.828-0.567-2.552-0.7560.2260.7730.1720.056-0.271.4480.695-0.076
170.477-1.568-0.828-1.2961.704-0.99-0.359-0.2280.887-1.568-0.689-0.9060.348-1.296-0.458-1.423
181.1560.9141.2640.555-1.568-1.183-2.202-0.828-0.689-0.314-0.567-0.756-1.183-1.183-0.906-0.359