Model info
Transcription factorPPARG
ModelPPARG_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
A
Motif rank
0
ConsensusvWbbRGGbSARAGGKSR
Best auROC (human)0.9583668063629861
Best auROC (mouse)0.9569816595742836
Peak sets in benchmark (human)53
Peak sets in benchmark (mouse)114
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyPPAR (NR1C){2.1.2.5}
HGNC9236
EntrezGene5468
UniProt IDPPARG_HUMAN
UniProt ACP37231
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.87621
0.0005 5.79101
0.0001 7.68961
GTEx tissue expression atlas PPARG expression
ReMap ChIP-seq dataset list PPARG datasets
Motifs in JASPAR
PCM
ACGT
01235.0127.082.056.0
02244.013.063.0180.0
0346.0180.0209.065.0
0455.061.0104.0280.0
05194.011.0268.027.0
0634.00.0420.046.0
0764.013.0400.023.0
0850.061.0215.0174.0
0928.0276.0151.045.0
10449.09.034.08.0
11287.024.0167.022.0
12395.03.099.03.0
1336.03.0446.015.0
1434.02.0402.062.0
1526.038.0160.0276.0
1660.0309.089.042.0
17377.030.058.035.0
PWM
ACGT
010.6260.016-0.415-0.788
020.663-2.163-0.6730.361
03-0.9790.3610.509-0.643
04-0.805-0.705-0.1810.8
050.435-2.3110.756-1.489
06-1.27-4.41.203-0.979
07-0.658-2.1631.155-1.64
08-0.898-0.7050.5370.327
09-1.4540.7850.187-1.0
101.27-2.484-1.27-2.584
110.824-1.60.287-1.681
121.142-3.325-0.23-3.325
13-1.215-3.3251.263-2.034
14-1.27-3.5731.16-0.689
15-1.525-1.1630.2440.785
16-0.7210.898-0.335-1.067
171.096-1.389-0.754-1.242