Model info
Transcription factorPRDM1
ModelPRDM1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusRRRAGdGAAAGKdv
Best auROC (human)0.9593838511976189
Best auROC (mouse)0.9624628919050592
Peak sets in benchmark (human)12
Peak sets in benchmark (mouse)9
Aligned words502
TF familyMore than 3 adjacent zinc finger factors{2.3.3}
TF subfamilyPRDM1-like factors{2.3.3.12}
HGNC9346
EntrezGene639
UniProt IDPRDM1_HUMAN
UniProt ACO75626
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.8221099999999995
0.0005 5.90371
0.0001 8.10987
GTEx tissue expression atlas PRDM1 expression
ReMap ChIP-seq dataset list PRDM1 datasets
Motifs in JASPAR
PCM
ACGT
01157.028.0284.031.0
02304.041.0131.024.0
03387.040.049.024.0
04457.00.039.04.0
0547.038.0404.011.0
06118.031.0109.0242.0
0723.03.0474.00.0
08496.01.03.00.0
09452.04.044.00.0
10493.00.06.01.0
1123.021.0449.07.0
1221.064.079.0336.0
1399.073.0230.098.0
14198.088.0133.081.0
PWM
ACGT
010.225-1.4540.814-1.358
020.881-1.090.046-1.6
031.122-1.114-0.918-1.6
041.287-4.4-1.138-3.126
05-0.958-1.1631.165-2.311
06-0.057-1.358-0.1350.655
07-1.64-3.3251.324-4.4
081.369-3.903-3.325-4.4
091.276-3.126-1.022-4.4
101.363-4.4-2.819-3.903
11-1.64-1.7251.27-2.694
12-1.725-0.658-0.4520.981
13-0.23-0.5290.604-0.24
140.455-0.3460.061-0.427