Model info
Transcription factorPrdm1
ModelPRDM1_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusRRRAGdGAAAGKdv
Best auROC (human)0.9593838511976189
Best auROC (mouse)0.9624628919050592
Peak sets in benchmark (human)12
Peak sets in benchmark (mouse)9
Aligned words502
TF familyMore than 3 adjacent zinc finger factors{2.3.3}
TF subfamilyPRDM1-like factors{2.3.3.12}
MGI99655
EntrezGene12142
UniProt IDPRDM1_MOUSE
UniProt ACQ60636
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.789960000000001
0.0005 5.879865000000001
0.0001 8.103580000000001
GTEx tissue expression atlas Prdm1 expression
Motifs in JASPAR
PCM
ACGT
01157.028.0284.031.0
02304.041.0131.024.0
03387.040.049.024.0
04457.00.039.04.0
0547.038.0404.011.0
06118.031.0109.0242.0
0723.03.0474.00.0
08496.01.03.00.0
09452.04.044.00.0
10493.00.06.01.0
1123.021.0449.07.0
1221.064.079.0336.0
1399.073.0230.098.0
14198.088.0133.081.0
PWM
ACGT
010.225-1.4540.814-1.358
020.881-1.090.046-1.6
031.122-1.114-0.918-1.6
041.287-4.4-1.138-3.126
05-0.958-1.1631.165-2.311
06-0.057-1.358-0.1350.655
07-1.64-3.3251.324-4.4
081.369-3.903-3.325-4.4
091.276-3.126-1.022-4.4
101.363-4.4-2.819-3.903
11-1.64-1.7251.27-2.694
12-1.725-0.658-0.4520.981
13-0.23-0.5290.604-0.24
140.455-0.3460.061-0.427