Model info
Transcription factorPRDM4
ModelPRDM4_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length16
Quality
D
Motif rank
0
ConsensusbbGGGGRGMCTTGAAA
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words130
TF familyFactors with multiple dispersed zinc fingers{2.3.4}
TF subfamilyunclassified{2.3.4.0}
HGNC9348
EntrezGene11108
UniProt IDPRDM4_HUMAN
UniProt ACQ9UKN5
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 0.82436
0.0005 2.29981
0.0001 5.42446
GTEx tissue expression atlas PRDM4 expression
ReMap ChIP-seq dataset list PRDM4 datasets
Motifs in JASPAR
PCM
ACGT
0119.522.558.529.5
0216.524.543.545.5
032.02.0119.07.0
041.250.25128.250.25
050.250.25129.250.25
063.251.25107.2518.25
0730.09.083.08.0
0810.04.0109.07.0
0928.086.01.015.0
100.0128.02.00.0
110.00.00.0130.0
129.00.06.0115.0
133.00.0127.00.0
14130.00.00.00.0
15130.00.00.00.0
16130.00.00.00.0
PWM
ACGT
01-0.487-0.3520.572-0.093
02-0.643-0.2710.2820.326
03-2.35-2.351.271-1.412
04-2.615-3.1351.345-3.135
05-3.135-3.1351.353-3.135
06-2.021-2.6151.168-0.549
07-0.077-1.1940.915-1.297
08-1.101-1.8661.184-1.412
09-0.1430.95-2.722-0.732
10-3.3221.343-2.35-3.322
11-3.322-3.322-3.3221.359
12-1.194-3.322-1.5421.237
13-2.079-3.3221.336-3.322
141.359-3.322-3.322-3.322
151.359-3.322-3.322-3.322
161.359-3.322-3.322-3.322