Model info
Transcription factorPrdm5
ModelPRDM5_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
A
Motif rank
0
ConsensusnhnvvnGGWGvdSvRGKhn
Best auROC (human)
Best auROC (mouse)0.9562821158197086
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)12
Aligned words507
TF familyMore than 3 adjacent zinc finger factors{2.3.3}
TF subfamilyunclassified{2.3.3.0}
MGI1918029
EntrezGene70779
UniProt IDPRDM5_MOUSE
UniProt ACQ9CXE0
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.03416
0.0005 10.055810000000001
0.0001 14.16206
GTEx tissue expression atlas Prdm5 expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
018.043.020.014.051.070.014.041.036.063.024.030.08.058.09.011.0
0224.030.036.013.066.056.067.045.011.026.017.013.011.020.058.07.0
0327.035.047.03.066.043.013.010.047.059.061.011.015.021.039.03.0
0447.060.045.03.055.083.018.02.063.062.031.04.04.09.013.01.0
0527.037.048.057.029.029.08.0148.031.021.013.042.03.03.02.02.0
060.00.090.00.00.02.085.03.00.00.070.01.00.04.0245.00.0
070.00.00.00.00.01.03.02.02.00.0449.039.00.00.04.00.0
082.00.00.00.01.00.00.00.0312.022.038.084.035.01.04.01.0
0910.07.0325.08.05.00.013.05.00.00.038.04.09.00.075.01.0
1017.02.04.01.03.03.01.00.0201.098.0141.011.09.01.08.00.0
1177.013.083.057.012.08.036.048.048.031.026.049.05.00.03.04.0
125.0114.015.08.05.033.03.011.014.0118.011.05.014.084.033.027.0
1325.06.05.02.0188.0104.045.012.023.030.07.02.021.014.011.05.0
1454.01.0176.026.068.02.041.043.022.01.038.07.04.01.015.01.0
150.00.0148.00.00.01.04.00.03.01.0261.05.05.00.069.03.0
160.00.04.04.00.01.01.00.013.026.0347.096.00.02.05.01.0
177.01.04.01.07.01.05.016.0100.079.027.0151.023.026.017.035.0
1847.026.043.021.024.031.019.033.019.012.012.010.043.042.068.050.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.3280.316-0.439-0.7880.4850.8-0.7880.2690.140.695-0.26-0.04-1.3280.613-1.215-1.022
02-0.26-0.040.14-0.860.7410.5780.7560.361-1.022-0.181-0.599-0.86-1.022-0.4390.613-1.454
03-0.1440.1120.404-2.2340.7410.316-0.86-1.1140.4040.630.663-1.022-0.721-0.3920.219-2.234
040.4040.6460.361-2.2340.560.969-0.543-2.5840.6950.679-0.008-1.975-1.975-1.215-0.86-3.126
05-0.1440.1670.4250.595-0.074-0.074-1.3281.545-0.008-0.392-0.860.293-2.234-2.234-2.584-2.584
06-4.4-4.41.05-4.4-4.4-2.5840.993-2.234-4.4-4.40.8-3.126-4.4-1.9752.048-4.4
07-4.4-4.4-4.4-4.4-4.4-3.126-2.234-2.584-2.584-4.42.6540.219-4.4-4.4-1.975-4.4
08-2.584-4.4-4.4-4.4-3.126-4.4-4.4-4.42.29-0.3460.1930.9810.112-3.126-1.975-3.126
09-1.114-1.4542.331-1.328-1.77-4.4-0.86-1.77-4.4-4.40.193-1.975-1.215-4.40.868-3.126
10-0.599-2.584-1.975-3.126-2.234-2.234-3.126-4.41.8511.1351.497-1.022-1.215-3.126-1.328-4.4
110.894-0.860.9690.595-0.938-1.3280.140.4250.425-0.008-0.1810.445-1.77-4.4-2.234-1.975
12-1.771.285-0.721-1.328-1.770.054-2.234-1.022-0.7881.32-1.022-1.77-0.7880.9810.054-0.144
13-0.22-1.6-1.77-2.5841.7841.1940.361-0.938-0.302-0.04-1.454-2.584-0.392-0.788-1.022-1.77
140.542-3.1261.718-0.1810.771-2.5840.2690.316-0.346-3.1260.193-1.454-1.975-3.126-0.721-3.126
15-4.4-4.41.545-4.4-4.4-3.126-1.975-4.4-2.234-3.1262.112-1.77-1.77-4.40.785-2.234
16-4.4-4.4-1.975-1.975-4.4-3.126-3.126-4.4-0.86-0.1812.3961.114-4.4-2.584-1.77-3.126
17-1.454-3.126-1.975-3.126-1.454-3.126-1.77-0.6581.1550.92-0.1441.565-0.302-0.181-0.5990.112
180.404-0.1810.316-0.392-0.26-0.008-0.490.054-0.49-0.938-0.938-1.1140.3160.2930.7710.465