Model info
Transcription factorPrdm5
ModelPRDM5_MOUSE.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
A
Motif rank
1
ConsensusvMdGGAGvn
Best auROC (human)
Best auROC (mouse)0.8545978961122742
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)12
Aligned words500
TF familyMore than 3 adjacent zinc finger factors{2.3.3}
TF subfamilyunclassified{2.3.3.0}
MGI1918029
EntrezGene70779
UniProt IDPRDM5_MOUSE
UniProt ACQ9CXE0
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.584960000000001
0.0005 6.256835
0.0001 7.128495000000001
GTEx tissue expression atlas Prdm5 expression
Motifs in JASPAR
PCM
ACGT
01123.0188.0159.030.0
02155.0263.059.023.0
03146.027.067.0260.0
043.00.0491.06.0
054.09.0481.06.0
06391.03.018.088.0
0734.018.0434.014.0
08245.097.0145.013.0
09164.091.0116.0129.0
PWM
ACGT
01-0.0160.4040.238-1.389
020.2130.737-0.737-1.64
030.154-1.489-0.6130.726
04-3.325-4.41.359-2.819
05-3.126-2.4841.338-2.819
061.132-3.325-1.868-0.346
07-1.27-1.8681.236-2.096
080.667-0.250.147-2.163
090.269-0.313-0.0740.031