Model info
Transcription factorPRDM6
ModelPRDM6_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
C
Motif rank
0
ConsensusvdvRRGAAAMMhv
Best auROC (human)0.9512882046917516
Best auROC (mouse)
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)
Aligned words500
TF familyMore than 3 adjacent zinc finger factors{2.3.3}
TF subfamilyunclassified{2.3.3.0}
HGNC9350
EntrezGene93166
UniProt IDPRDM6_HUMAN
UniProt ACQ9NQX0
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.24441
0.0005 7.16031
0.0001 8.87297
GTEx tissue expression atlas PRDM6 expression
ReMap ChIP-seq dataset list PRDM6 datasets
Motifs in JASPAR
PCM
ACGT
01232.083.0123.062.0
02265.035.0134.066.0
03217.098.0165.020.0
04308.019.0101.072.0
05236.05.0226.033.0
061.023.0471.05.0
07489.08.00.03.0
08492.02.00.06.0
09469.04.04.023.0
10380.066.034.020.0
11302.0117.056.025.0
12246.096.063.095.0
13252.078.0101.069.0
PWM
ACGT
010.613-0.403-0.016-0.689
020.745-1.2420.069-0.628
030.546-0.240.275-1.77
040.894-1.818-0.21-0.543
050.63-2.9610.587-1.298
06-3.903-1.641.317-2.961
071.355-2.584-4.4-3.325
081.361-3.573-4.4-2.819
091.313-3.126-3.126-1.64
101.104-0.628-1.27-1.77
110.875-0.065-0.788-1.561
120.671-0.26-0.673-0.271
130.695-0.464-0.21-0.584