Model info
| Transcription factor | PRDM6 (GeneCards) | ||||||||
| Model | PRDM6_HUMAN.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 13 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vdvRRGAAAMMhv | ||||||||
| Best auROC (human) | 0.951 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 500 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | unclassified {2.3.3.0} | ||||||||
| HGNC | HGNC:9350 | ||||||||
| EntrezGene | GeneID:93166 (SSTAR profile) | ||||||||
| UniProt ID | PRDM6_HUMAN | ||||||||
| UniProt AC | Q9NQX0 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | PRDM6 expression | ||||||||
| ReMap ChIP-seq dataset list | PRDM6 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 232.0 | 83.0 | 123.0 | 62.0 |
| 02 | 265.0 | 35.0 | 134.0 | 66.0 |
| 03 | 217.0 | 98.0 | 165.0 | 20.0 |
| 04 | 308.0 | 19.0 | 101.0 | 72.0 |
| 05 | 236.0 | 5.0 | 226.0 | 33.0 |
| 06 | 1.0 | 23.0 | 471.0 | 5.0 |
| 07 | 489.0 | 8.0 | 0.0 | 3.0 |
| 08 | 492.0 | 2.0 | 0.0 | 6.0 |
| 09 | 469.0 | 4.0 | 4.0 | 23.0 |
| 10 | 380.0 | 66.0 | 34.0 | 20.0 |
| 11 | 302.0 | 117.0 | 56.0 | 25.0 |
| 12 | 246.0 | 96.0 | 63.0 | 95.0 |
| 13 | 252.0 | 78.0 | 101.0 | 69.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.613 | -0.403 | -0.016 | -0.689 |
| 02 | 0.745 | -1.242 | 0.069 | -0.628 |
| 03 | 0.546 | -0.24 | 0.275 | -1.77 |
| 04 | 0.894 | -1.818 | -0.21 | -0.543 |
| 05 | 0.63 | -2.961 | 0.587 | -1.298 |
| 06 | -3.903 | -1.64 | 1.317 | -2.961 |
| 07 | 1.355 | -2.584 | -4.4 | -3.325 |
| 08 | 1.361 | -3.573 | -4.4 | -2.819 |
| 09 | 1.313 | -3.126 | -3.126 | -1.64 |
| 10 | 1.104 | -0.628 | -1.27 | -1.77 |
| 11 | 0.875 | -0.065 | -0.788 | -1.561 |
| 12 | 0.671 | -0.26 | -0.673 | -0.271 |
| 13 | 0.695 | -0.464 | -0.21 | -0.584 |