Model info
Transcription factorPTF1A
ModelPTF1A_HUMAN.H11MO.1.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
B
Motif rank
1
ConsensusRRCAGMTGK
Best auROC (human)
Best auROC (mouse)0.9304493897952447
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)20
Aligned words503
TF familyTal-related factors{1.2.3}
TF subfamilyTwist-like factors{1.2.3.2}
HGNC23734
EntrezGene256297
UniProt IDPTF1A_HUMAN
UniProt ACQ7RTS3
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.9458649999999995
0.0005 5.635315
0.0001 7.3879649999999994
GTEx tissue expression atlas PTF1A expression
ReMap ChIP-seq dataset list PTF1A datasets
Motifs in JASPAR
PCM
ACGT
01261.07.0186.046.0
0262.060.0365.013.0
0321.0458.016.05.0
04489.03.07.01.0
0511.08.0465.016.0
0690.0364.043.03.0
0762.04.06.0428.0
082.06.0476.016.0
0913.075.0310.0102.0
PWM
ACGT
010.73-2.6940.393-0.979
02-0.689-0.7211.063-2.163
03-1.7251.29-1.975-2.961
041.355-3.325-2.694-3.903
05-2.311-2.5841.305-1.975
06-0.3241.061-1.044-3.325
07-0.689-3.126-2.8191.222
08-3.573-2.8191.328-1.975
09-2.163-0.5030.901-0.201