Model info
Transcription factorPtf1a
ModelPTF1A_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length20
Quality
A
Motif rank
0
ConsensusnMCAKCTGSbnbhbhbbhhn
Best auROC (human)
Best auROC (mouse)0.9691944420354918
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)20
Aligned words500
TF familyTal-related factors{1.2.3}
TF subfamilyTwist-like factors{1.2.3.2}
MGI1328312
EntrezGene19213
UniProt IDPTF1A_MOUSE
UniProt ACQ9QX98
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.63711
0.0005 10.56821
0.0001 14.599860000000001
GTEx tissue expression atlas Ptf1a expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0122.067.024.06.052.075.018.07.017.086.032.02.011.050.027.04.0
022.096.03.01.07.0265.03.03.02.093.04.02.00.016.02.01.0
038.01.02.00.0416.014.07.033.08.00.03.01.05.01.00.01.0
041.033.0320.083.00.00.08.08.00.00.011.01.00.05.025.05.0
050.01.00.00.06.029.01.02.034.0324.04.02.02.089.05.01.0
062.07.00.033.07.018.00.0418.00.00.00.010.00.02.00.03.0
070.00.09.00.01.02.022.02.00.00.00.00.04.04.0448.08.0
081.02.01.01.00.05.00.01.013.0306.095.065.00.06.01.03.0
093.04.01.06.027.0117.018.0157.015.034.021.027.01.030.010.029.0
1015.04.021.06.030.046.027.082.03.022.016.09.016.049.078.076.0
114.026.020.014.08.068.021.024.04.091.034.013.08.090.049.026.0
1210.01.05.08.051.0104.030.090.022.057.022.023.08.028.019.022.0
134.024.040.023.022.086.022.060.010.022.024.020.08.039.044.052.0
1413.09.06.016.035.046.013.077.022.039.023.046.012.042.019.082.0
1514.021.030.017.012.052.04.068.05.020.011.025.013.078.027.0103.0
1610.012.012.010.023.085.015.048.010.041.012.09.014.0117.038.044.0
1716.028.04.09.063.0133.04.055.010.041.04.022.014.053.011.033.0
1813.039.033.018.066.0118.021.050.03.012.07.01.011.063.022.023.0
1914.034.029.016.088.078.025.041.07.028.034.014.016.030.026.020.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.3460.756-0.26-1.60.5040.868-0.543-1.454-0.5991.0040.023-2.584-1.0220.465-0.144-1.975
02-2.5841.114-2.234-3.126-1.4542.127-2.234-2.234-2.5841.082-1.975-2.584-4.4-0.658-2.584-3.126
03-1.328-3.126-2.584-4.42.577-0.788-1.4540.054-1.328-4.4-2.234-3.126-1.77-3.126-4.4-3.126
04-3.1260.0542.3150.969-4.4-4.4-1.328-1.328-4.4-4.4-1.022-3.126-4.4-1.77-0.22-1.77
05-4.4-3.126-4.4-4.4-1.6-0.074-3.126-2.5840.0832.328-1.975-2.584-2.5841.039-1.77-3.126
06-2.584-1.454-4.40.054-1.454-0.543-4.42.582-4.4-4.4-4.4-1.114-4.4-2.584-4.4-2.234
07-4.4-4.4-1.215-4.4-3.126-2.584-0.346-2.584-4.4-4.4-4.4-4.4-1.975-1.9752.651-1.328
08-3.126-2.584-3.126-3.126-4.4-1.77-4.4-3.126-0.862.271.1040.726-4.4-1.6-3.126-2.234
09-2.234-1.975-3.126-1.6-0.1441.311-0.5431.604-0.7210.083-0.392-0.144-3.126-0.04-1.114-0.074
10-0.721-1.975-0.392-1.6-0.040.383-0.1440.957-2.234-0.346-0.658-1.215-0.6580.4450.9070.881
11-1.975-0.181-0.439-0.788-1.3280.771-0.392-0.26-1.9751.0610.083-0.86-1.3281.050.445-0.181
12-1.114-3.126-1.77-1.3280.4851.194-0.041.05-0.3460.595-0.346-0.302-1.328-0.108-0.49-0.346
13-1.975-0.260.244-0.302-0.3461.004-0.3460.646-1.114-0.346-0.26-0.439-1.3280.2190.3390.504
14-0.86-1.215-1.6-0.6580.1120.383-0.860.894-0.3460.219-0.3020.383-0.9380.293-0.490.957
15-0.788-0.392-0.04-0.599-0.9380.504-1.9750.771-1.77-0.439-1.022-0.22-0.860.907-0.1441.184
16-1.114-0.938-0.938-1.114-0.3020.993-0.7210.425-1.1140.269-0.938-1.215-0.7881.3110.1930.339
17-0.658-0.108-1.975-1.2150.6951.439-1.9750.56-1.1140.269-1.975-0.346-0.7880.523-1.0220.054
18-0.860.2190.054-0.5430.7411.32-0.3920.465-2.234-0.938-1.454-3.126-1.0220.695-0.346-0.302
19-0.7880.083-0.074-0.6581.0270.907-0.220.269-1.454-0.1080.083-0.788-0.658-0.04-0.181-0.439