Model info
Transcription factorRARA
ModelRARA_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
1
ConsensusvAGGKCAvvv
Best auROC (human)0.9481588118226871
Best auROC (mouse)0.8742891774425898
Peak sets in benchmark (human)29
Peak sets in benchmark (mouse)32
Aligned words501
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyRetinoic acid receptors (NR1B){2.1.2.1}
HGNC9864
EntrezGene5914
UniProt IDRARA_HUMAN
UniProt ACP10276
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.706485
0.0005 5.747809999999999
0.0001 7.552099999999999
GTEx tissue expression atlas RARA expression
ReMap ChIP-seq dataset list RARA datasets
Motifs in JASPAR
PCM
ACGT
01173.0150.0168.09.0
02415.05.077.03.0
037.00.0490.03.0
045.04.0486.05.0
0517.030.094.0359.0
061.0473.020.06.0
07486.03.09.02.0
0872.0125.0275.028.0
09169.085.0217.029.0
1075.081.0274.070.0
PWM
ACGT
010.3220.180.293-2.484
021.191-2.961-0.477-3.325
03-2.694-4.41.357-3.325
04-2.961-3.1261.349-2.961
05-1.92-1.389-0.2811.047
06-3.9031.322-1.77-2.819
071.349-3.325-2.484-3.573
08-0.5430.00.782-1.454
090.298-0.380.546-1.421
10-0.503-0.4270.778-0.57