Model info
Transcription factorRARA
ModelRARA_HUMAN.H11MO.2.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length17
Quality
A
Motif rank
2
ConsensusRGKTSAnvvdvRSKKSR
Best auROC (human)0.8061217868443136
Best auROC (mouse)0.843863709680345
Peak sets in benchmark (human)29
Peak sets in benchmark (mouse)32
Aligned words122
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyRetinoic acid receptors (NR1B){2.1.2.1}
HGNC9864
EntrezGene5914
UniProt IDRARA_HUMAN
UniProt ACP10276
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.64091
0.0005 5.478859999999999
0.0001 7.21771
GTEx tissue expression atlas RARA expression
ReMap ChIP-seq dataset list RARA datasets
Motifs in JASPAR
PCM
ACGT
0167.7811.97146.5954.654
020.00.419119.0711.509
035.9243.52277.60533.949
045.7020.8399.95104.51
050.75588.77821.9669.501
06106.1870.013.3041.509
0727.47136.94326.01630.57
0820.98546.13839.73514.142
0933.56323.02748.2316.18
1053.62212.21438.70416.461
1129.7930.26452.2258.721
1271.78515.92821.79811.488
138.77613.55593.8354.834
1412.0756.59573.15629.173
1516.8813.2217.60673.294
1611.89984.21716.2018.683
1787.72610.10513.8499.321
PWM
ACGT
010.785-2.2950.419-1.681
02-3.267-2.9671.341-2.452
03-1.485-1.8960.9190.111
04-1.517-2.737-1.0371.212
05-2.7791.051-0.306-1.078
061.228-3.267-0.774-2.452
07-0.0930.193-0.1450.01
08-0.3490.4090.264-0.718
090.1-0.2610.452-0.593
100.556-0.8520.238-0.577
11-0.0150.00.53-1.154
120.842-0.608-0.313-0.908
13-1.148-0.7571.106-1.651
14-0.863-1.3950.86-0.035
15-0.554-0.78-0.5140.862
16-0.8760.999-0.592-1.158
171.039-1.023-0.737-1.095