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Model info
Transcription factorRara
ModelRARA_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length23
Quality
A
Motif rank
0
ConsensusvddvdbbvdRAGKTCARRKbYRb
Best auROC (human)0.863
Best auROC (mouse)0.945
Peak sets in benchmark (human)29
Peak sets in benchmark (mouse)32
Aligned words498
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyRetinoic acid receptors (NR1B) {2.1.2.1}
MGIMGI:97856
EntrezGeneGeneID:19401
(SSTAR profile)
UniProt IDRARA_MOUSE
UniProt ACP11416
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 7.80151
0.0005 9.909010000000002
0.0001 14.36751
GTEx tissue expression atlas Rara expression
Motifs in JASPAR
MA0159.1 (RARA::RXRA; Homo sapiens)
MA0729.1 (RARA; Homo sapiens)
MA1149.1 (RARA::RXRG; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0153.09.056.011.027.09.012.019.0110.08.097.025.017.04.033.08.0
0253.013.0125.016.09.05.05.011.037.027.071.063.022.06.013.022.0
0320.010.082.09.09.019.08.015.046.016.0134.018.013.040.037.022.0
0423.06.038.021.060.06.03.016.090.014.0123.034.016.012.021.015.0
0526.035.045.083.010.010.02.016.022.035.030.098.02.024.019.041.0
0613.017.018.012.027.040.012.025.023.031.024.018.08.0164.033.033.0
0717.014.033.07.0175.037.014.026.022.018.039.08.021.033.017.017.0
0867.015.0137.016.050.08.04.040.036.017.024.026.014.01.023.020.0
0967.011.087.02.028.06.07.00.072.08.0102.06.020.09.071.02.0
10174.00.011.02.027.03.04.00.0231.02.031.03.07.03.00.00.0
1116.04.0417.02.02.01.05.00.05.00.041.00.00.01.04.00.0
121.00.010.012.01.00.04.01.03.011.0193.0260.00.00.01.01.0
131.00.01.03.03.02.02.04.012.021.017.0158.00.011.00.0263.0
143.09.04.00.05.024.04.01.01.017.02.00.03.0403.019.03.0
157.03.02.00.0445.02.03.03.029.00.00.00.04.00.00.00.0
16361.023.078.023.05.00.00.00.03.00.02.00.01.00.02.00.0
1728.09.0328.05.06.06.07.04.023.014.039.06.04.03.014.02.0
186.010.036.09.08.05.08.011.022.09.0338.019.00.04.07.06.0
199.09.010.08.09.07.04.08.038.092.044.0215.08.012.011.014.0
2016.025.018.05.03.084.010.023.015.023.018.013.07.0201.07.030.0
2110.07.019.05.0262.026.015.030.026.07.016.04.025.06.030.010.0
2232.048.0137.0106.020.05.05.016.09.023.032.016.010.013.017.09.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.527-1.2110.582-1.018-0.14-1.211-0.934-0.4861.254-1.3241.128-0.216-0.595-1.9710.058-1.324
020.527-0.8561.381-0.654-1.211-1.766-1.766-1.0180.171-0.140.8180.699-0.342-1.596-0.856-0.342
03-0.435-1.110.961-1.211-1.211-0.486-1.324-0.7170.387-0.6541.45-0.539-0.8560.2480.171-0.342
04-0.298-1.5960.197-0.3880.65-1.596-2.23-0.6541.054-0.7841.3650.087-0.654-0.934-0.388-0.717
05-0.1770.1160.3650.973-1.11-1.11-2.58-0.654-0.3420.116-0.0361.139-2.58-0.256-0.4860.273
06-0.856-0.595-0.539-0.934-0.140.248-0.934-0.216-0.298-0.004-0.256-0.539-1.3241.6520.0580.058
07-0.595-0.7840.058-1.4511.7170.171-0.784-0.177-0.342-0.5390.223-1.324-0.3880.058-0.595-0.595
080.76-0.7171.472-0.6540.469-1.324-1.9710.2480.144-0.595-0.256-0.177-0.784-3.122-0.298-0.435
090.76-1.0181.02-2.58-0.104-1.596-1.451-4.3970.832-1.3241.178-1.596-0.435-1.2110.818-2.58
101.711-4.397-1.018-2.58-0.14-2.23-1.971-4.3971.994-2.58-0.004-2.23-1.451-2.23-4.397-4.397
11-0.654-1.9712.584-2.58-2.58-3.122-1.766-4.397-1.766-4.3970.273-4.397-4.397-3.122-1.971-4.397
12-3.122-4.397-1.11-0.934-3.122-4.397-1.971-3.122-2.23-1.0181.8142.112-4.397-4.397-3.122-3.122
13-3.122-4.397-3.122-2.23-2.23-2.58-2.58-1.971-0.934-0.388-0.5951.615-4.397-1.018-4.3972.123
14-2.23-1.211-1.971-4.397-1.766-0.256-1.971-3.122-3.122-0.595-2.58-4.397-2.232.549-0.486-2.23
15-1.451-2.23-2.58-4.3972.649-2.58-2.23-2.23-0.07-4.397-4.397-4.397-1.971-4.397-4.397-4.397
162.44-0.2980.911-0.298-1.766-4.397-4.397-4.397-2.23-4.397-2.58-4.397-3.122-4.397-2.58-4.397
17-0.104-1.2112.344-1.766-1.596-1.596-1.451-1.971-0.298-0.7840.223-1.596-1.971-2.23-0.784-2.58
18-1.596-1.110.144-1.211-1.324-1.766-1.324-1.018-0.342-1.2112.374-0.486-4.397-1.971-1.451-1.596
19-1.211-1.211-1.11-1.324-1.211-1.451-1.971-1.3240.1971.0760.3431.922-1.324-0.934-1.018-0.784
20-0.654-0.216-0.539-1.766-2.230.985-1.11-0.298-0.717-0.298-0.539-0.856-1.4511.855-1.451-0.036
21-1.11-1.451-0.486-1.7662.119-0.177-0.717-0.036-0.177-1.451-0.654-1.971-0.216-1.596-0.036-1.11
220.0270.4291.4721.217-0.435-1.766-1.766-0.654-1.211-0.2980.027-0.654-1.11-0.856-0.595-1.211