Model info
Transcription factorRara
ModelRARA_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length20
Quality
A
Motif rank
0
ConsensusRRdYYRdRAGKTCAAGGWSR
Best auROC (human)0.753328187264353
Best auROC (mouse)0.9061447540235525
Peak sets in benchmark (human)29
Peak sets in benchmark (mouse)32
Aligned words447
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyRetinoic acid receptors (NR1B){2.1.2.1}
MGI97856
EntrezGene19401
UniProt IDRARA_MOUSE
UniProt ACP11416
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 2.58901
0.0005 3.8540599999999996
0.0001 6.52511
GTEx tissue expression atlas Rara expression
Motifs in JASPAR
PCM
ACGT
01110.022.0248.065.0
0259.050.0314.022.0
03134.034.0222.055.0
0431.062.050.0302.0
0529.0303.053.060.0
06278.058.066.043.0
07145.038.0199.063.0
08222.015.0203.05.0
09377.01.064.03.0
1011.012.0417.05.0
1112.03.0119.0311.0
121.010.011.0423.0
136.0423.010.06.0
14435.03.06.01.0
15375.013.049.08.0
1631.07.0390.017.0
1724.020.0385.016.0
1846.043.043.0313.0
1919.0351.040.035.0
20351.016.040.038.0
PWM
ACGT
01-0.011-1.5670.794-0.528
02-0.622-0.7831.029-1.567
030.184-1.1550.684-0.691
04-1.243-0.574-0.7830.99
05-1.3070.993-0.727-0.606
060.908-0.639-0.513-0.929
070.262-1.0480.576-0.558
080.684-1.9210.595-2.85
091.211-3.799-0.543-3.216
10-2.198-2.1211.311-2.85
11-2.121-3.2160.0661.019
12-3.799-2.281-2.1981.326
13-2.7071.326-2.281-2.707
141.353-3.216-2.707-3.799
151.206-2.05-0.803-2.472
16-1.243-2.5821.245-1.806
17-1.486-1.6561.232-1.862
18-0.864-0.929-0.9291.026
19-1.7041.14-0.999-1.127
201.14-1.862-0.999-1.048