Model info
Transcription factorRara
ModelRARA_MOUSE.H11MO.3.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
3
ConsensusbhvAGGTCASvv
Best auROC (human)0.9121071663381793
Best auROC (mouse)0.8884336143882706
Peak sets in benchmark (human)29
Peak sets in benchmark (mouse)32
Aligned words499
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyRetinoic acid receptors (NR1B){2.1.2.1}
MGI97856
EntrezGene19401
UniProt IDRARA_MOUSE
UniProt ACP11416
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.781385
0.0005 5.735465
0.0001 7.622775000000001
GTEx tissue expression atlas Rara expression
Motifs in JASPAR
PCM
ACGT
0151.0218.0150.080.0
02154.0187.074.084.0
03188.0116.0189.06.0
04371.01.0122.05.0
0514.00.0478.07.0
064.04.0479.012.0
074.028.065.0402.0
081.0472.018.08.0
09492.00.04.03.0
1061.0137.0277.024.0
11126.087.0234.052.0
12108.094.0222.075.0
PWM
ACGT
01-0.8770.5530.182-0.437
020.2080.401-0.514-0.39
030.406-0.0720.411-2.817
041.082-3.901-0.022-2.959
05-2.094-4.3981.334-2.692
06-3.124-3.1241.336-2.232
07-3.124-1.452-0.6411.162
08-3.9011.322-1.866-2.582
091.363-4.398-3.124-3.323
10-0.7030.0930.791-1.598
110.01-0.3550.623-0.858
12-0.142-0.2790.571-0.501