Model info
| Transcription factor | Rara | ||||||||
| Model | RARA_MOUSE.H11MO.3.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | A | ||||||||
| Motif rank | 3 | ||||||||
| Consensus | bhvAGGTCASvv | ||||||||
| Best auROC (human) | 0.912 | ||||||||
| Best auROC (mouse) | 0.888 | ||||||||
| Peak sets in benchmark (human) | 29 | ||||||||
| Peak sets in benchmark (mouse) | 32 | ||||||||
| Aligned words | 499 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
| TF subfamily | Retinoic acid receptors (NR1B) {2.1.2.1} | ||||||||
| MGI | MGI:97856 | ||||||||
| EntrezGene | GeneID:19401 (SSTAR profile) | ||||||||
| UniProt ID | RARA_MOUSE | ||||||||
| UniProt AC | P11416 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Rara expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 51.0 | 218.0 | 150.0 | 80.0 |
| 02 | 154.0 | 187.0 | 74.0 | 84.0 |
| 03 | 188.0 | 116.0 | 189.0 | 6.0 |
| 04 | 371.0 | 1.0 | 122.0 | 5.0 |
| 05 | 14.0 | 0.0 | 478.0 | 7.0 |
| 06 | 4.0 | 4.0 | 479.0 | 12.0 |
| 07 | 4.0 | 28.0 | 65.0 | 402.0 |
| 08 | 1.0 | 472.0 | 18.0 | 8.0 |
| 09 | 492.0 | 0.0 | 4.0 | 3.0 |
| 10 | 61.0 | 137.0 | 277.0 | 24.0 |
| 11 | 126.0 | 87.0 | 234.0 | 52.0 |
| 12 | 108.0 | 94.0 | 222.0 | 75.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.877 | 0.553 | 0.182 | -0.437 |
| 02 | 0.208 | 0.401 | -0.514 | -0.39 |
| 03 | 0.406 | -0.072 | 0.411 | -2.817 |
| 04 | 1.082 | -3.901 | -0.022 | -2.959 |
| 05 | -2.094 | -4.398 | 1.334 | -2.692 |
| 06 | -3.124 | -3.124 | 1.336 | -2.232 |
| 07 | -3.124 | -1.452 | -0.641 | 1.162 |
| 08 | -3.901 | 1.322 | -1.866 | -2.582 |
| 09 | 1.363 | -4.398 | -3.124 | -3.323 |
| 10 | -0.703 | 0.093 | 0.791 | -1.598 |
| 11 | 0.01 | -0.355 | 0.623 | -0.858 |
| 12 | -0.142 | -0.279 | 0.571 | -0.501 |