Model info
Transcription factorRARB
ModelRARB_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length11
Quality
D
Motif rank
0
ConsensusvAGGTCAnvRv
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words25
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyRetinoic acid receptors (NR1B){2.1.2.1}
HGNC9865
EntrezGene5915
UniProt IDRARB_HUMAN
UniProt ACP10826
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.935895
0.0005 5.518559999999999
0.0001 7.51727
GTEx tissue expression atlas RARB expression
ReMap ChIP-seq dataset list RARB datasets
Motifs in JASPAR
PCM
ACGT
013.8256.7229.9090.811
0217.4420.03.8250.0
030.00.021.2670.0
040.00.020.2241.043
050.00.00.021.267
060.021.2670.00.0
0721.2670.00.00.0
084.7524.2888.4023.825
096.7224.2888.0552.202
106.9545.3318.9820.0
115.366.9836.8092.115
PWM
ACGT
01-0.2820.2080.563-1.351
021.097-2.074-0.282-2.074
03-2.074-2.0741.287-2.074
04-2.074-2.0741.239-1.213
05-2.074-2.074-2.0741.287
06-2.0741.287-2.074-2.074
071.287-2.074-2.074-2.074
08-0.098-0.1850.41-0.282
090.208-0.1850.372-0.718
100.2380.0020.472-2.074
110.0070.2420.219-0.748