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Model info
Transcription factorRARG
(GeneCards)
ModelRARG_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length22
Quality
A
Motif rank
0
ConsensusnvRKKYCAbnbbRhYCYnbnbn
Best auROC (human)0.815
Best auROC (mouse)
Peak sets in benchmark (human)12
Peak sets in benchmark (mouse)
Aligned words508
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyRetinoic acid receptors (NR1B) {2.1.2.1}
HGNCHGNC:9866
EntrezGeneGeneID:5916
(SSTAR profile)
UniProt IDRARG_HUMAN
UniProt ACP13631
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.62536
0.0005 10.36696
0.0001 14.00941
GTEx tissue expression atlas RARG expression
ReMap ChIP-seq dataset list RARG datasets
Motifs in JASPAR
MA0859.1 (Rarg; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0120.042.044.09.024.059.018.021.09.028.036.08.09.046.0117.09.0
0246.01.015.00.0150.016.06.03.0170.017.020.08.022.04.017.04.0
0319.03.0252.0114.05.01.014.018.08.01.035.014.01.00.08.06.0
042.01.030.00.02.01.01.01.03.08.0271.027.03.03.055.091.0
050.03.01.06.01.04.01.07.012.041.024.0280.04.077.02.036.0
061.013.01.02.02.0119.02.02.00.028.00.00.05.0311.013.00.0
078.00.00.00.0430.06.019.016.011.00.02.03.03.01.00.00.0
0837.0187.093.0135.01.04.00.02.02.08.08.03.02.09.01.07.0
0913.08.017.04.069.065.020.054.014.036.034.018.019.023.023.082.0
1028.028.050.09.024.066.017.025.011.033.030.020.03.0105.034.016.0
1124.06.010.026.029.042.055.0106.016.022.014.079.03.011.08.048.0
1212.06.052.02.034.05.036.06.056.08.020.03.025.015.0207.012.0
1325.012.021.069.021.03.02.08.0134.099.022.060.05.07.03.08.0
144.0159.07.015.07.075.01.038.04.025.02.017.07.035.014.089.0
151.017.02.02.017.0258.02.017.02.020.01.01.012.0124.09.014.0
163.013.05.011.026.0202.06.0185.00.03.01.010.02.012.08.012.0
173.09.013.06.0133.032.019.046.06.05.03.06.033.036.083.066.0
1816.04.079.076.015.020.012.035.011.022.067.018.013.027.064.020.0
1914.015.018.08.019.027.06.021.031.059.095.037.05.020.039.085.0
2015.018.022.014.017.048.03.053.031.050.030.047.06.086.023.036.0
2114.017.029.09.044.068.044.046.021.021.020.016.011.035.072.032.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.4370.2940.341-1.213-0.2580.632-0.541-0.39-1.213-0.1060.142-1.326-1.2130.3851.313-1.213
020.385-3.124-0.719-4.3981.561-0.656-1.598-2.2321.686-0.597-0.437-1.326-0.344-1.973-0.597-1.973
03-0.488-2.2322.0791.287-1.768-3.124-0.786-0.541-1.326-3.1240.114-0.786-3.124-4.398-1.326-1.598
04-2.582-3.124-0.038-4.398-2.582-3.124-3.124-3.124-2.232-1.3262.151-0.142-2.232-2.2320.5621.063
05-4.398-2.232-3.124-1.598-3.124-1.973-3.124-1.452-0.9360.271-0.2582.184-1.9730.896-2.5820.142
06-3.124-0.858-3.124-2.582-2.5821.33-2.582-2.582-4.398-0.106-4.398-4.398-1.7682.289-0.858-4.398
07-1.326-4.398-4.398-4.3982.612-1.598-0.488-0.656-1.02-4.398-2.582-2.232-2.232-3.124-4.398-4.398
080.1691.7811.0841.456-3.124-1.973-4.398-2.582-2.582-1.326-1.326-2.232-2.582-1.213-3.124-1.452
09-0.858-1.326-0.597-1.9730.7870.728-0.4370.544-0.7860.1420.085-0.541-0.488-0.3-0.30.959
10-0.106-0.1060.467-1.213-0.2580.743-0.597-0.218-1.020.056-0.038-0.437-2.2321.2050.085-0.656
11-0.258-1.598-1.112-0.179-0.0720.2940.5621.215-0.656-0.344-0.7860.922-2.232-1.02-1.3260.427
12-0.936-1.5980.506-2.5820.085-1.7680.142-1.5980.58-1.326-0.437-2.232-0.218-0.7191.882-0.936
13-0.218-0.936-0.390.787-0.39-2.232-2.582-1.3261.4481.147-0.3440.648-1.768-1.452-2.232-1.326
14-1.9731.619-1.452-0.719-1.4520.87-3.1240.195-1.973-0.218-2.582-0.597-1.4520.114-0.7861.041
15-3.124-0.597-2.582-2.582-0.5972.102-2.582-0.597-2.582-0.437-3.124-3.124-0.9361.371-1.213-0.786
16-2.232-0.858-1.768-1.02-0.1791.858-1.5981.77-4.398-2.232-3.124-1.112-2.582-0.936-1.326-0.936
17-2.232-1.213-0.858-1.5981.4410.025-0.4880.385-1.598-1.768-2.232-1.5980.0560.1420.9710.743
18-0.656-1.9730.9220.883-0.719-0.437-0.9360.114-1.02-0.3440.758-0.541-0.858-0.1420.713-0.437
19-0.786-0.719-0.541-1.326-0.488-0.142-1.598-0.39-0.0060.6321.1060.169-1.768-0.4370.2210.995
20-0.719-0.541-0.344-0.786-0.5970.427-2.2320.525-0.0060.467-0.0380.406-1.5981.006-0.30.142
21-0.786-0.597-0.072-1.2130.3410.7730.3410.385-0.39-0.39-0.437-0.656-1.020.1140.830.025