Model info
Transcription factorRARG
ModelRARG_HUMAN.H11MO.1.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length8
Quality
B
Motif rank
1
ConsensusvAGGKCAn
Best auROC (human)0.8153813179829233
Best auROC (mouse)
Peak sets in benchmark (human)12
Peak sets in benchmark (mouse)
Aligned words394
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyRetinoic acid receptors (NR1B){2.1.2.1}
HGNC9866
EntrezGene5916
UniProt IDRARG_HUMAN
UniProt ACP13631
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.03162
0.0005 6.013199999999999
0.0001 7.63293
GTEx tissue expression atlas RARG expression
ReMap ChIP-seq dataset list RARG datasets
Motifs in JASPAR
PCM
ACGT
01111.0131.0137.014.0
02292.04.095.02.0
032.00.0390.01.0
042.01.0376.014.0
0531.04.072.0286.0
062.0381.010.00.0
07383.03.06.01.0
0840.0109.0204.040.0
PWM
ACGT
010.120.2840.328-1.862
021.079-2.899-0.033-3.352
03-3.352-4.2021.367-3.689
04-3.352-3.6891.331-1.862
05-1.122-2.899-0.3051.059
06-3.3521.344-2.161-4.202
071.349-3.1-2.589-3.689
08-0.8770.1020.723-0.877