Model info
Transcription factorRARG
ModelRARG_HUMAN.H11MO.2.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length20
Quality
D
Motif rank
2
ConsensusdddGbdbRvMnvRAGGTCAv
Best auROC (human)0.6555486606219202
Best auROC (mouse)
Peak sets in benchmark (human)12
Peak sets in benchmark (mouse)
Aligned words24
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyRetinoic acid receptors (NR1B){2.1.2.1}
HGNC9866
EntrezGene5916
UniProt IDRARG_HUMAN
UniProt ACP13631
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.72456
0.0005 5.526159999999999
0.0001 7.18721
GTEx tissue expression atlas RARG expression
ReMap ChIP-seq dataset list RARG datasets
Motifs in JASPAR
PCM
ACGT
014.9572.47812.3924.203
025.0653.66411.3153.987
037.8660.9711.3153.879
040.00.9718.5344.526
051.0784.63410.4537.866
065.4961.944.95711.638
072.69413.0394.7413.556
0812.7163.0177.221.078
095.288.0827.8662.802
104.09515.3022.6941.94
115.6037.5437.0043.879
1211.8533.1256.4662.586
138.7285.9279.3750.0
1420.1510.03.0170.862
150.00.024.030.0
160.00.016.9187.112
174.4180.00.019.612
182.04720.3661.6160.0
1922.9531.0780.00.0
206.8168.2177.7861.212
PWM
ACGT
01-0.168-0.7310.662-0.308
02-0.149-0.4220.577-0.352
030.242-1.3490.577-0.375
04-2.147-1.3491.044-0.246
05-1.29-0.2260.5030.242
06-0.078-0.911-0.1680.603
07-0.6680.71-0.206-0.447
080.686-0.5790.164-1.29
09-0.1130.2660.242-0.637
10-0.330.861-0.668-0.911
11-0.0610.2040.137-0.375
120.62-0.5510.065-0.699
130.336-0.0120.402-2.147
141.125-2.147-0.579-1.412
15-2.147-2.1471.295-2.147
16-2.147-2.1470.9570.15
17-0.266-2.147-2.1471.099
18-0.8731.135-1.037-2.147
191.25-1.29-2.147-2.147
200.1120.2810.232-1.221