Model info
Transcription factorRarg
ModelRARG_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length18
Quality
C
Motif rank
0
ConsensusRRGTCAvvvhSvMMbddv
Best auROC (human)0.8268900357802218
Best auROC (mouse)
Peak sets in benchmark (human)12
Peak sets in benchmark (mouse)
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyRetinoic acid receptors (NR1B){2.1.2.1}
MGI97858
EntrezGene19411
UniProt IDRARG_MOUSE
UniProt ACP18911
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.795159999999999
0.0005 5.63441
0.0001 7.3574600000000006
GTEx tissue expression atlas Rarg expression
Motifs in JASPAR
PCM
ACGT
01288.09.0194.09.0
0288.03.0378.031.0
0370.03.0423.04.0
0432.05.067.0396.0
057.0444.018.031.0
06460.06.026.08.0
0793.0165.0188.054.0
08215.0146.0121.018.0
09149.093.0220.038.0
10103.063.054.0280.0
1147.083.0343.027.0
12204.0110.0115.071.0
13114.0308.048.030.0
14148.0296.021.035.0
1570.0113.073.0244.0
1689.082.0228.0101.0
17135.056.0240.069.0
18156.0117.0170.057.0
PWM
ACGT
010.828-2.4840.435-2.484
02-0.346-3.3251.098-1.358
03-0.57-3.3251.21-3.126
04-1.328-2.961-0.6131.145
05-2.6941.259-1.868-1.358
061.294-2.819-1.525-2.584
07-0.2910.2750.404-0.823
080.5370.154-0.032-1.868
090.174-0.2910.56-1.163
10-0.191-0.673-0.8230.8
11-0.958-0.4031.002-1.489
120.485-0.126-0.082-0.556
13-0.0910.894-0.938-1.389
140.1670.855-1.725-1.242
15-0.57-0.1-0.5290.663
16-0.335-0.4150.595-0.21
170.076-0.7880.646-0.584
180.219-0.0650.304-0.771