Model info
| Transcription factor | RAX2 (GeneCards) | ||||||||
| Model | RAX2_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 12 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hTAATTRRhYhW | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 33721 | ||||||||
| TF family | Paired-related HD factors {3.1.3} | ||||||||
| TF subfamily | RAX {3.1.3.22} | ||||||||
| HGNC | HGNC:18286 | ||||||||
| EntrezGene | GeneID:84839 (SSTAR profile) | ||||||||
| UniProt ID | RAX2_HUMAN | ||||||||
| UniProt AC | Q96IS3 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | RAX2 expression | ||||||||
| ReMap ChIP-seq dataset list | RAX2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 5566.0 | 12648.0 | 5216.0 | 10146.0 |
| 02 | 1821.75 | 2046.75 | 1488.75 | 28218.75 |
| 03 | 28954.25 | 1460.25 | 1642.25 | 1519.25 |
| 04 | 33284.75 | 93.75 | 96.75 | 100.75 |
| 05 | 2.0 | 11.0 | 20.0 | 33543.0 |
| 06 | 15.0 | 2073.0 | 314.0 | 31174.0 |
| 07 | 22926.25 | 890.25 | 9757.25 | 2.25 |
| 08 | 17468.25 | 3012.25 | 12761.25 | 334.25 |
| 09 | 18831.25 | 4010.25 | 3413.25 | 7321.25 |
| 10 | 1858.0 | 2765.0 | 2175.0 | 26778.0 |
| 11 | 9111.0 | 4288.0 | 3348.0 | 16829.0 |
| 12 | 23537.0 | 3067.0 | 3124.0 | 3848.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.411 | 0.41 | -0.476 | 0.19 |
| 02 | -1.527 | -1.41 | -1.728 | 1.212 |
| 03 | 1.238 | -1.747 | -1.63 | -1.708 |
| 04 | 1.377 | -4.468 | -4.437 | -4.397 |
| 05 | -7.508 | -6.425 | -5.917 | 1.385 |
| 06 | -6.167 | -1.398 | -3.278 | 1.312 |
| 07 | 1.005 | -2.241 | 0.15 | -7.455 |
| 08 | 0.733 | -1.024 | 0.419 | -3.216 |
| 09 | 0.808 | -0.738 | -0.899 | -0.137 |
| 10 | -1.507 | -1.11 | -1.35 | 1.16 |
| 11 | 0.082 | -0.671 | -0.919 | 0.695 |
| 12 | 1.031 | -1.006 | -0.988 | -0.78 |