Model info
Transcription factorRFX1
ModelRFX1_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv10
Model length22
Quality
B
Motif rank
0
ConsensusbbbbSbGTTGCCWdGGvvMSvv
Best auROC (human)0.7120360030425308
Best auROC (mouse)0.9945631374271083
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)7
Aligned words457
TF familyRFX-related factors{3.3.3}
TF subfamilyRFX1 (EF-C){3.3.3.0.1}
HGNC9982
EntrezGene5989
UniProt IDRFX1_HUMAN
UniProt ACP22670
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 1.3728099999999999
0.0005 2.5332099999999995
0.0001 4.97456
GTEx tissue expression atlas RFX1 expression
ReMap ChIP-seq dataset list RFX1 datasets
Motifs in JASPAR
PCM
ACGT
0133.439170.643186.94965.501
0249.722208.785122.24675.777
0330.693196.424146.64282.771
0442.095183.178171.26759.992
0524.117271.609112.3448.464
0662.452155.665158.0380.383
073.1863.932447.4351.978
080.90948.6010.92406.1
0910.35185.6553.853356.672
1014.5076.226410.77925.019
111.041410.490.97944.021
120.0360.5095.32390.699
13338.06928.21944.20346.04
1474.13629.64141.89210.865
1521.3261.767432.2861.151
1640.71629.651377.0229.142
17103.823185.38997.88269.437
18184.77644.167193.30534.283
19284.96896.29457.40217.866
2032.661326.16255.56942.139
2167.247140.328215.05633.9
2269.86130.346227.82428.501
PWM
ACGT
01-1.1960.3980.488-0.546
02-0.8140.5980.068-0.403
03-1.2780.5370.248-0.316
04-0.9750.4680.401-0.631
05-1.5060.859-0.016-0.839
06-0.5920.3070.322-0.345
07-3.199-3.0531.356-3.495
08-3.859-0.836-3.8541.26
09-2.276-0.283-3.0671.13
10-1.976-2.7021.271-1.472
11-3.8061.27-3.831-0.932
12-4.3251.141-2.826-0.226
131.077-1.358-0.928-0.888
14-0.424-1.3110.2150.608
15-1.621-3.5571.322-3.764
16-1.007-1.3111.186-2.383
17-0.0930.48-0.151-0.488
180.477-0.9290.521-1.172
190.907-0.168-0.674-1.786
20-1.2191.041-0.706-0.974
21-0.520.2040.627-1.183
22-0.4830.1310.685-1.348