Model info
Transcription factorRFX1
ModelRFX1_HUMAN.H11MO.1.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
B
Motif rank
1
ConsensusbGTTGCCWdGR
Best auROC (human)0.574072725423972
Best auROC (mouse)0.9938978775745613
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)7
Aligned words500
TF familyRFX-related factors{3.3.3}
TF subfamilyRFX1 (EF-C){3.3.3.0.1}
HGNC9982
EntrezGene5989
UniProt IDRFX1_HUMAN
UniProt ACP22670
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.88048
0.0005 4.98362
0.0001 7.22259
GTEx tissue expression atlas RFX1 expression
ReMap ChIP-seq dataset list RFX1 datasets
Motifs in JASPAR
PCM
ACGT
0150.0132.0161.0157.0
024.02.0494.00.0
030.06.03.0491.0
0413.038.02.0447.0
0537.08.0410.045.0
060.0472.01.027.0
070.0329.00.0171.0
08388.016.026.070.0
0998.013.0158.0231.0
1020.03.0475.02.0
1175.055.0347.023.0
PWM
ACGT
01-0.8980.0540.250.225
02-3.126-3.5731.365-4.4
03-4.4-2.819-3.3251.359
04-2.163-1.163-3.5731.265
05-1.189-2.5841.179-1.0
06-4.41.32-3.903-1.489
07-4.40.96-4.40.31
081.124-1.975-1.525-0.57
09-0.24-2.1630.2320.608
10-1.77-3.3251.326-3.573
11-0.503-0.8051.013-1.64